miRNA display CGI


Results 81 - 100 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 26807 0.68 0.325367
Target:  5'- aGGCGCCCGGCCuuGCAUcggaauucgagGCCGCgACgGg -3'
miRNA:   3'- -UUGUGGGCCGG--CGUA-----------CGGCGaUGgCg -5'
23978 3' -60.9 NC_005262.1 + 11747 0.68 0.325367
Target:  5'- -uCugCCGGCCaGCGUGCagCGCgacgccggcGCCGCc -3'
miRNA:   3'- uuGugGGCCGG-CGUACG--GCGa--------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 17085 0.68 0.325367
Target:  5'- cGCGCCCGucgacGCgGCggGCCGCgaggagguccACCGCg -3'
miRNA:   3'- uUGUGGGC-----CGgCGuaCGGCGa---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 10670 0.68 0.325367
Target:  5'- -cCGCUCGcGCCGC--GCUGCU-CCGCg -3'
miRNA:   3'- uuGUGGGC-CGGCGuaCGGCGAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 24856 0.68 0.331531
Target:  5'- -uCGCCCGGCuCGCcgcgGUGCUGaauccacuucgGCCGCa -3'
miRNA:   3'- uuGUGGGCCG-GCG----UACGGCga---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 46449 0.68 0.333085
Target:  5'- -cCGCCCGcGCCGgacccgaAUGCCGC-GCCGg -3'
miRNA:   3'- uuGUGGGC-CGGCg------UACGGCGaUGGCg -5'
23978 3' -60.9 NC_005262.1 + 23491 0.68 0.333085
Target:  5'- uGCugCCcGCCGCAUcGCCGCcuugUGgCGCu -3'
miRNA:   3'- uUGugGGcCGGCGUA-CGGCG----AUgGCG- -5'
23978 3' -60.9 NC_005262.1 + 21724 0.68 0.333085
Target:  5'- -cCAUCUGGCCGUc-GCCGUcGCCGUc -3'
miRNA:   3'- uuGUGGGCCGGCGuaCGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 61572 0.68 0.333085
Target:  5'- cGACuguUCCGGCCGCGcgaagaUGUCGuCUAgCGCu -3'
miRNA:   3'- -UUGu--GGGCCGGCGU------ACGGC-GAUgGCG- -5'
23978 3' -60.9 NC_005262.1 + 34720 0.68 0.333085
Target:  5'- cGACGCCgGGUCGagcuucuUGCCGUUguagucgcACCGCu -3'
miRNA:   3'- -UUGUGGgCCGGCgu-----ACGGCGA--------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 27955 0.68 0.333085
Target:  5'- --gGCUCGGCCGCcuUGCCGCcguCCuuGCg -3'
miRNA:   3'- uugUGGGCCGGCGu-ACGGCGau-GG--CG- -5'
23978 3' -60.9 NC_005262.1 + 12402 0.68 0.333085
Target:  5'- uGCGgCaCGaGCCGCAUGCCGUcgaacacguUGCCGa -3'
miRNA:   3'- uUGUgG-GC-CGGCGUACGGCG---------AUGGCg -5'
23978 3' -60.9 NC_005262.1 + 3349 0.68 0.340937
Target:  5'- gAugACgaGGCCGCG-GCuCGCUagauGCCGCa -3'
miRNA:   3'- -UugUGggCCGGCGUaCG-GCGA----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 11182 0.68 0.340937
Target:  5'- --uGCCCcGCCaaGCGUGCCaGCggGCCGCc -3'
miRNA:   3'- uugUGGGcCGG--CGUACGG-CGa-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 31622 0.68 0.340937
Target:  5'- uGCACCUGcGCgGCAaGCCGacCUACgGCg -3'
miRNA:   3'- uUGUGGGC-CGgCGUaCGGC--GAUGgCG- -5'
23978 3' -60.9 NC_005262.1 + 34967 0.68 0.340937
Target:  5'- cGGCGCUCGGCCGCAaGUCGaaGCUccagGCa -3'
miRNA:   3'- -UUGUGGGCCGGCGUaCGGCgaUGG----CG- -5'
23978 3' -60.9 NC_005262.1 + 58526 0.68 0.340937
Target:  5'- -cCGCCCuGCC-CGUGCUGCUGCaCGa -3'
miRNA:   3'- uuGUGGGcCGGcGUACGGCGAUG-GCg -5'
23978 3' -60.9 NC_005262.1 + 58970 0.68 0.340937
Target:  5'- -cCAgCCGGCCGCcgGCgGCcucacgccucCCGCg -3'
miRNA:   3'- uuGUgGGCCGGCGuaCGgCGau--------GGCG- -5'
23978 3' -60.9 NC_005262.1 + 1121 0.68 0.340937
Target:  5'- -cCGCCucuugcucugCGGCCGC-UGCgggcuucgaUGCUGCCGCg -3'
miRNA:   3'- uuGUGG----------GCCGGCGuACG---------GCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 23845 0.68 0.340937
Target:  5'- --aGgCCGGCaCGCcgcccuUGCCGgUGCCGCc -3'
miRNA:   3'- uugUgGGCCG-GCGu-----ACGGCgAUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.