miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 13635 0.66 0.425693
Target:  5'- aAGCAa-CGGUCGCGgccucgaUGCCGCUGCacaCGCu -3'
miRNA:   3'- -UUGUggGCCGGCGU-------ACGGCGAUG---GCG- -5'
23978 3' -60.9 NC_005262.1 + 14044 0.66 0.416573
Target:  5'- gGACGCCCaauauuucggaguGGCC-CAacGCCGCcGCCGUg -3'
miRNA:   3'- -UUGUGGG-------------CCGGcGUa-CGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 14295 0.69 0.298686
Target:  5'- cGCGCCCGccgucaguGCCGCGUggaguuccggauggaGCgGCuUGCCGCa -3'
miRNA:   3'- uUGUGGGC--------CGGCGUA---------------CGgCG-AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 15264 0.7 0.261895
Target:  5'- gAACGCCgCGuagcGCUGCGUGCCGUccaacauCCGCg -3'
miRNA:   3'- -UUGUGG-GC----CGGCGUACGGCGau-----GGCG- -5'
23978 3' -60.9 NC_005262.1 + 15893 0.67 0.373669
Target:  5'- --gAUCC-GCCGCGUGCgCGCgacguggcGCCGCg -3'
miRNA:   3'- uugUGGGcCGGCGUACG-GCGa-------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 16278 0.66 0.408469
Target:  5'- cAAUGCCUuGCUGCGcGCCGCUcGCgGCg -3'
miRNA:   3'- -UUGUGGGcCGGCGUaCGGCGA-UGgCG- -5'
23978 3' -60.9 NC_005262.1 + 16403 0.67 0.39958
Target:  5'- -cCGgCCGGCCGCcgGgauuCUGC-GCCGCg -3'
miRNA:   3'- uuGUgGGCCGGCGuaC----GGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 16757 0.69 0.275074
Target:  5'- -uCGCCCGGCUGCGgccacuugaacuUGUCGU--CCGCg -3'
miRNA:   3'- uuGUGGGCCGGCGU------------ACGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 16873 0.87 0.015049
Target:  5'- aGGCGCCCGGCCGCGcGCCGg-GCCGCa -3'
miRNA:   3'- -UUGUGGGCCGGCGUaCGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 17085 0.68 0.325367
Target:  5'- cGCGCCCGucgacGCgGCggGCCGCgaggagguccACCGCg -3'
miRNA:   3'- uUGUGGGC-----CGgCGuaCGGCGa---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 17539 0.71 0.219792
Target:  5'- gGGCACgCGGUCGCGcgcgagGCgGCaGCCGCg -3'
miRNA:   3'- -UUGUGgGCCGGCGUa-----CGgCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 17644 0.68 0.31033
Target:  5'- cGCGCgCC-GCCGCGgcUGCCGCcucgcgcgcgACCGCg -3'
miRNA:   3'- uUGUG-GGcCGGCGU--ACGGCGa---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 17857 0.68 0.324602
Target:  5'- uGCGCUCGGCCucgaauucgagcaGCGUGUCGU--CCGCc -3'
miRNA:   3'- uUGUGGGCCGG-------------CGUACGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 19523 0.67 0.382179
Target:  5'- cAACGCCCaG-CGCuucagAUGCCGCgACUGCg -3'
miRNA:   3'- -UUGUGGGcCgGCG-----UACGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 20452 0.66 0.41748
Target:  5'- cGGCACCgucGCCGCGUggGCUGUU-CCGCa -3'
miRNA:   3'- -UUGUGGgc-CGGCGUA--CGGCGAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 20575 0.68 0.317782
Target:  5'- gAGCAgCCCGGCgaGCA-GCgCGCggcgcGCCGCa -3'
miRNA:   3'- -UUGU-GGGCCGg-CGUaCG-GCGa----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 20647 0.66 0.454698
Target:  5'- -cUugCCGGCCGC-UGCCgGCU-CCu- -3'
miRNA:   3'- uuGugGGCCGGCGuACGG-CGAuGGcg -5'
23978 3' -60.9 NC_005262.1 + 21453 0.71 0.219792
Target:  5'- cGAguUCC-GCCGCuuugcGUGCCGCUACUGCu -3'
miRNA:   3'- -UUguGGGcCGGCG-----UACGGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 21724 0.68 0.333085
Target:  5'- -cCAUCUGGCCGUc-GCCGUcGCCGUc -3'
miRNA:   3'- uuGUGGGCCGGCGuaCGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 21810 0.67 0.390816
Target:  5'- gAGCGCCUugaGGCCGUccuUGCCGau-CUGCg -3'
miRNA:   3'- -UUGUGGG---CCGGCGu--ACGGCgauGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.