Results 81 - 100 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23978 | 3' | -60.9 | NC_005262.1 | + | 27920 | 0.67 | 0.35704 |
Target: 5'- cAGCACcuugaagucagaCCGGCCGCGcuucUCGCUACCGa -3' miRNA: 3'- -UUGUG------------GGCCGGCGUac--GGCGAUGGCg -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 27955 | 0.68 | 0.333085 |
Target: 5'- --gGCUCGGCCGCcuUGCCGCcguCCuuGCg -3' miRNA: 3'- uugUGGGCCGGCGu-ACGGCGau-GG--CG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 28355 | 0.67 | 0.365289 |
Target: 5'- cAGCGCCUcaagGGCCGCAacuCCGaCUuCCGCg -3' miRNA: 3'- -UUGUGGG----CCGGCGUac-GGC-GAuGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 29488 | 0.66 | 0.454698 |
Target: 5'- aAGCACaUCaGCCGCAUGgCGau-CCGCg -3' miRNA: 3'- -UUGUG-GGcCGGCGUACgGCgauGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 29636 | 0.66 | 0.421118 |
Target: 5'- cGCAaCCGGCaucggcagcgagcgGCAUGCCGC--CCGCg -3' miRNA: 3'- uUGUgGGCCGg-------------CGUACGGCGauGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 29739 | 0.72 | 0.174275 |
Target: 5'- gGGCG-CgGGCgGCAUGCCGCUcGCUGCc -3' miRNA: 3'- -UUGUgGgCCGgCGUACGGCGA-UGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 30102 | 0.76 | 0.095018 |
Target: 5'- cGACACgCCGGCCGcCgcgaagcccacgaucGUGCCGCUGCUGg -3' miRNA: 3'- -UUGUG-GGCCGGC-G---------------UACGGCGAUGGCg -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 30896 | 0.66 | 0.461395 |
Target: 5'- cGCACCgGGUuugcgauguaggucUGCAUGUCGgCUccuuaGCCGCg -3' miRNA: 3'- uUGUGGgCCG--------------GCGUACGGC-GA-----UGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 31366 | 0.68 | 0.340937 |
Target: 5'- cGCGauCuuGGCCGCGgacgacUGCgGCUGCCGa -3' miRNA: 3'- uUGU--GggCCGGCGU------ACGgCGAUGGCg -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 31622 | 0.68 | 0.340937 |
Target: 5'- uGCACCUGcGCgGCAaGCCGacCUACgGCg -3' miRNA: 3'- uUGUGGGC-CGgCGUaCGGC--GAUGgCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 31734 | 0.67 | 0.365289 |
Target: 5'- --gGCCggCGGUCGCAUGUCGCgcaAgCGCa -3' miRNA: 3'- uugUGG--GCCGGCGUACGGCGa--UgGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 32687 | 0.66 | 0.43586 |
Target: 5'- cGCugCCGGCCGCcgGCCu---CCa- -3' miRNA: 3'- uUGugGGCCGGCGuaCGGcgauGGcg -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 33766 | 0.72 | 0.169771 |
Target: 5'- uAACGCCauGCCGaucGCCGCUACCGa -3' miRNA: 3'- -UUGUGGgcCGGCguaCGGCGAUGGCg -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 34019 | 0.75 | 0.120076 |
Target: 5'- uGACGCCgGGCCGCAUcgugcGCCGCgucgAUCGg -3' miRNA: 3'- -UUGUGGgCCGGCGUA-----CGGCGa---UGGCg -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 34042 | 0.69 | 0.300844 |
Target: 5'- cGACGCCgCGuuccgggaucgcuuGCCGCGUGCC-C-GCCGCg -3' miRNA: 3'- -UUGUGG-GC--------------CGGCGUACGGcGaUGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 34605 | 0.67 | 0.360324 |
Target: 5'- aAACGCCaCaGCCGCGUcgucucgcagaagucGCgCGCcGCCGCg -3' miRNA: 3'- -UUGUGG-GcCGGCGUA---------------CG-GCGaUGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 34720 | 0.68 | 0.333085 |
Target: 5'- cGACGCCgGGUCGagcuucuUGCCGUUguagucgcACCGCu -3' miRNA: 3'- -UUGUGGgCCGGCgu-----ACGGCGA--------UGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 34967 | 0.68 | 0.340937 |
Target: 5'- cGGCGCUCGGCCGCAaGUCGaaGCUccagGCa -3' miRNA: 3'- -UUGUGGGCCGGCGUaCGGCgaUGG----CG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 35086 | 0.66 | 0.43586 |
Target: 5'- gGACggGCCCGcGCUGC-UGCCcgGCUGCCu- -3' miRNA: 3'- -UUG--UGGGC-CGGCGuACGG--CGAUGGcg -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 35328 | 0.75 | 0.110704 |
Target: 5'- gGGCGCCCaGCCGC-UGCCGaucgcGCCGCc -3' miRNA: 3'- -UUGUGGGcCGGCGuACGGCga---UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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