miRNA display CGI


Results 21 - 40 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 55008 0.66 0.454698
Target:  5'- cACGCCCGGCaGCGUcaggugcgaGCCGUcgaacUGgCGCg -3'
miRNA:   3'- uUGUGGGCCGgCGUA---------CGGCG-----AUgGCG- -5'
23978 3' -60.9 NC_005262.1 + 54923 0.66 0.408469
Target:  5'- cGCACCUGacgcuGCCggGCGUGUCGCUG-CGCu -3'
miRNA:   3'- uUGUGGGC-----CGG--CGUACGGCGAUgGCG- -5'
23978 3' -60.9 NC_005262.1 + 53895 0.67 0.385619
Target:  5'- cGAUGCCCGuGCCGCugucgaccugcaucaGguUGCCGgUAUCGCc -3'
miRNA:   3'- -UUGUGGGC-CGGCG---------------U--ACGGCgAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 53768 0.66 0.41116
Target:  5'- cGCGCCCGGCUGauagAUGCCcucgggcagguugGCgaucgccuuggcgaaUGCCGCg -3'
miRNA:   3'- uUGUGGGCCGGCg---UACGG-------------CG---------------AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 53709 0.71 0.203588
Target:  5'- --aACCCGGCCGCGUcgaagGCCGUgg-CGCu -3'
miRNA:   3'- uugUGGGCCGGCGUA-----CGGCGaugGCG- -5'
23978 3' -60.9 NC_005262.1 + 53703 0.67 0.365289
Target:  5'- cGACGCCCGGCuCGggaacgacCGUGUacuCGUUugCGCg -3'
miRNA:   3'- -UUGUGGGCCG-GC--------GUACG---GCGAugGCG- -5'
23978 3' -60.9 NC_005262.1 + 53372 0.67 0.373669
Target:  5'- cGGCGCCauG-CGCcUGCCGCagACCGCg -3'
miRNA:   3'- -UUGUGGgcCgGCGuACGGCGa-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 52624 0.71 0.208871
Target:  5'- aAGCGCaCCGGCU-CGUGgCGCgcgACCGCa -3'
miRNA:   3'- -UUGUG-GGCCGGcGUACgGCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 51381 0.7 0.261895
Target:  5'- cGACGCCggccaaGGCCGCGccUGaCCGUgugcACCGCg -3'
miRNA:   3'- -UUGUGGg-----CCGGCGU--AC-GGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 51364 0.67 0.400464
Target:  5'- cAGCAgCCGGCgGCcggugagguucagcuUGCCGUccuUACCGUa -3'
miRNA:   3'- -UUGUgGGCCGgCGu--------------ACGGCG---AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 51277 0.75 0.104842
Target:  5'- gAACcucaCCGGCCGCcgGCUGCUgcgcauGCCGCu -3'
miRNA:   3'- -UUGug--GGCCGGCGuaCGGCGA------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 51187 0.67 0.373669
Target:  5'- cGACgACgCGGCgGCccGCUGgaGCCGCg -3'
miRNA:   3'- -UUG-UGgGCCGgCGuaCGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 51124 0.66 0.426611
Target:  5'- cGACGCgCCGGUCGaCAaGgCGCUcgacGCCGUg -3'
miRNA:   3'- -UUGUG-GGCCGGC-GUaCgGCGA----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 50840 0.66 0.41748
Target:  5'- cACGCUCGGCaucccgcgCGCAgaaaUGCCGCaggUGCCGa -3'
miRNA:   3'- uUGUGGGCCG--------GCGU----ACGGCG---AUGGCg -5'
23978 3' -60.9 NC_005262.1 + 50561 0.74 0.126729
Target:  5'- cGCACCCGuucaaCCGCAgcccgaGcCCGCUGCCGCu -3'
miRNA:   3'- uUGUGGGCc----GGCGUa-----C-GGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 50483 0.68 0.31033
Target:  5'- cGACAUCaagccucaggaGGCCGCcaAUGCUGgaACCGCu -3'
miRNA:   3'- -UUGUGGg----------CCGGCG--UACGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 50424 0.72 0.183603
Target:  5'- gAGCGCgagGGCCGCGUGCaCGUcgucgUGCCGCg -3'
miRNA:   3'- -UUGUGgg-CCGGCGUACG-GCG-----AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 50316 0.67 0.383037
Target:  5'- gAGgAgCCGGCCGCAgcgcccGCCGCgcaggacgaagcgcCCGCg -3'
miRNA:   3'- -UUgUgGGCCGGCGUa-----CGGCGau------------GGCG- -5'
23978 3' -60.9 NC_005262.1 + 50276 0.67 0.382179
Target:  5'- cGCGCCCGcGCCgGCcgaGcCCGUgacgGCCGCg -3'
miRNA:   3'- uUGUGGGC-CGG-CGua-C-GGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 49790 0.66 0.427531
Target:  5'- -cCGCCCGGCaCGCcgucgcgguucagguUGCgCGC-GCCGCc -3'
miRNA:   3'- uuGUGGGCCG-GCGu--------------ACG-GCGaUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.