miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 49760 0.82 0.03341
Target:  5'- cGGCGCCCGcGCCcgagGCuccgGCCGCUGCCGCg -3'
miRNA:   3'- -UUGUGGGC-CGG----CGua--CGGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 49606 0.69 0.303013
Target:  5'- -uCGCUCGGCCGCGacGUCGCUaACCagGCg -3'
miRNA:   3'- uuGUGGGCCGGCGUa-CGGCGA-UGG--CG- -5'
23978 3' -60.9 NC_005262.1 + 49315 0.71 0.225433
Target:  5'- cGCGCgCGGaCUGCGcGCCGCcgagGCCGCc -3'
miRNA:   3'- uUGUGgGCC-GGCGUaCGGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48674 0.73 0.156879
Target:  5'- aAGCugCCGGCCagcGCGUuccagccggacGCCGC-GCCGCa -3'
miRNA:   3'- -UUGugGGCCGG---CGUA-----------CGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48633 0.67 0.365289
Target:  5'- --aGCCCGGCCGCuucaagGUGCUGa---CGCa -3'
miRNA:   3'- uugUGGGCCGGCG------UACGGCgaugGCG- -5'
23978 3' -60.9 NC_005262.1 + 48445 0.7 0.243096
Target:  5'- cAugACCaCGcGCgCGUAUGCCGCgcggAUCGCg -3'
miRNA:   3'- -UugUGG-GC-CG-GCGUACGGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48430 0.66 0.424775
Target:  5'- cAGCGCCgGGUCGguCGUGCCGagcuucuucugGCCGUa -3'
miRNA:   3'- -UUGUGGgCCGGC--GUACGGCga---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48127 0.68 0.317782
Target:  5'- cGCGCUugCGGgCGCG-GCCgGCUGCUGCg -3'
miRNA:   3'- uUGUGG--GCCgGCGUaCGG-CGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48058 0.75 0.107736
Target:  5'- aAGCGCgUCGGUCGCAccUGCCGCgacgaGCCGCc -3'
miRNA:   3'- -UUGUG-GGCCGGCGU--ACGGCGa----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48022 0.66 0.41748
Target:  5'- cAACACCCaGaccaCGCAgcagccgGCCGCgcCCGCn -3'
miRNA:   3'- -UUGUGGGcCg---GCGUa------CGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 47812 0.66 0.464281
Target:  5'- cGCACCagauacaGGCgGCGaGCCGCcGCCcgGCg -3'
miRNA:   3'- uUGUGGg------CCGgCGUaCGGCGaUGG--CG- -5'
23978 3' -60.9 NC_005262.1 + 47713 0.67 0.387346
Target:  5'- cGCGCCgGGCgGCGgcucGCCGCcuguaucuggugcGCCGCc -3'
miRNA:   3'- uUGUGGgCCGgCGUa---CGGCGa------------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 46725 0.67 0.39958
Target:  5'- cGCugUCGGCCaucaGCGUGCC-CUucAUCGCg -3'
miRNA:   3'- uUGugGGCCGG----CGUACGGcGA--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 46681 0.66 0.43586
Target:  5'- cGACGCCC-GCCG-AUGCagucaGC-GCCGCg -3'
miRNA:   3'- -UUGUGGGcCGGCgUACGg----CGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 46449 0.68 0.333085
Target:  5'- -cCGCCCGcGCCGgacccgaAUGCCGC-GCCGg -3'
miRNA:   3'- uuGUGGGC-CGGCg------UACGGCGaUGGCg -5'
23978 3' -60.9 NC_005262.1 + 45986 0.73 0.161075
Target:  5'- cGCAUCCGGUCGgAUGCCuuCUGcCCGCg -3'
miRNA:   3'- uUGUGGGCCGGCgUACGGc-GAU-GGCG- -5'
23978 3' -60.9 NC_005262.1 + 45502 0.73 0.156879
Target:  5'- --aGCCCGGCCgaguuuugcGCGgcUGCCuGCUGCUGCg -3'
miRNA:   3'- uugUGGGCCGG---------CGU--ACGG-CGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 45426 0.67 0.390816
Target:  5'- gGACGCCCGcGCCGCcuUGCagaccuugcauCGC-GCCGUu -3'
miRNA:   3'- -UUGUGGGC-CGGCGu-ACG-----------GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 45295 0.72 0.183603
Target:  5'- --aGCCCGGCgGaCAUGCCGC--CUGCg -3'
miRNA:   3'- uugUGGGCCGgC-GUACGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 45112 0.69 0.295829
Target:  5'- --aACUCGG-CGgGUGCCGCgaacACCGCg -3'
miRNA:   3'- uugUGGGCCgGCgUACGGCGa---UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.