miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 45103 0.68 0.317782
Target:  5'- -uCGCCaucuGCCGCGUguuggcguccGCCGcCUGCCGCg -3'
miRNA:   3'- uuGUGGgc--CGGCGUA----------CGGC-GAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 44681 0.66 0.43493
Target:  5'- cGCGCCCGcGCCcgauccgaacgugGCAUcGCCGCg--CGCg -3'
miRNA:   3'- uUGUGGGC-CGG-------------CGUA-CGGCGaugGCG- -5'
23978 3' -60.9 NC_005262.1 + 44005 0.71 0.219792
Target:  5'- -gUAgUCGGCCGCGguuggcGCCGCgcugACCGCc -3'
miRNA:   3'- uuGUgGGCCGGCGUa-----CGGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 43912 0.73 0.144879
Target:  5'- cGCGgCCGGcCCGCG-GCCGUgucGCCGCg -3'
miRNA:   3'- uUGUgGGCC-GGCGUaCGGCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 43823 0.7 0.2555
Target:  5'- cGGCGacaCGGCCGCggGCCG--GCCGCg -3'
miRNA:   3'- -UUGUgg-GCCGGCGuaCGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 43170 0.66 0.454698
Target:  5'- --uGCCCGGUCagGUcgaugAUGaaGCUGCCGCg -3'
miRNA:   3'- uugUGGGCCGG--CG-----UACggCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 43055 0.71 0.208871
Target:  5'- --gACCCGGCCgGCA--CCGCgcGCCGCg -3'
miRNA:   3'- uugUGGGCCGG-CGUacGGCGa-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 42991 0.69 0.271065
Target:  5'- cGCGCCgGGCCGCuucguGUcgggccaguucuucgGCCGCUACCu- -3'
miRNA:   3'- uUGUGGgCCGGCG-----UA---------------CGGCGAUGGcg -5'
23978 3' -60.9 NC_005262.1 + 42361 0.73 0.165372
Target:  5'- -uCGCCgGuGCC-CGUGCCGCUcgucGCCGCa -3'
miRNA:   3'- uuGUGGgC-CGGcGUACGGCGA----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 41454 0.67 0.39958
Target:  5'- -uCAgCCGuGCCGUucGUGCCGU--CCGCg -3'
miRNA:   3'- uuGUgGGC-CGGCG--UACGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 41197 0.66 0.449
Target:  5'- cGCGCCCGGCgaccgcuucgagcacCGUAUGaCUGCcgGCaCGCu -3'
miRNA:   3'- uUGUGGGCCG---------------GCGUAC-GGCGa-UG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 40633 0.73 0.152782
Target:  5'- --uGCCCGGCgCGUAagaGCCGCccGCCGCg -3'
miRNA:   3'- uugUGGGCCG-GCGUa--CGGCGa-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 40560 0.68 0.317782
Target:  5'- cGCGCCgGGCaacaccgGCgGUGCCGCgACCGUc -3'
miRNA:   3'- uUGUGGgCCGg------CG-UACGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 40425 0.67 0.382179
Target:  5'- cAGCGCgCCGGCCGUGaGCCGaUGCUcgaaGCg -3'
miRNA:   3'- -UUGUG-GGCCGGCGUaCGGCgAUGG----CG- -5'
23978 3' -60.9 NC_005262.1 + 39310 0.7 0.261895
Target:  5'- uAAUuCCCGGCCGCcUGCuUGCUgGCCGg -3'
miRNA:   3'- -UUGuGGGCCGGCGuACG-GCGA-UGGCg -5'
23978 3' -60.9 NC_005262.1 + 38644 0.69 0.288778
Target:  5'- -uCAUCCGGcCCGCggcgGUGCCGaucgucACCGCg -3'
miRNA:   3'- uuGUGGGCC-GGCG----UACGGCga----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 36054 0.67 0.373669
Target:  5'- uACGCCCGGUac--UGCCaacCUGCCGCa -3'
miRNA:   3'- uUGUGGGCCGgcguACGGc--GAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 35717 0.82 0.035356
Target:  5'- -uCGCCC-GCCGCGUGCCGUUGCCGg -3'
miRNA:   3'- uuGUGGGcCGGCGUACGGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 35492 0.66 0.426611
Target:  5'- -uCGCCgGGCUggaGCGUGCgCGCgguauugagcGCCGCg -3'
miRNA:   3'- uuGUGGgCCGG---CGUACG-GCGa---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 35328 0.75 0.110704
Target:  5'- gGGCGCCCaGCCGC-UGCCGaucgcGCCGCc -3'
miRNA:   3'- -UUGUGGGcCGGCGuACGGCga---UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.