miRNA display CGI


Results 81 - 100 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 35086 0.66 0.43586
Target:  5'- gGACggGCCCGcGCUGC-UGCCcgGCUGCCu- -3'
miRNA:   3'- -UUG--UGGGC-CGGCGuACGG--CGAUGGcg -5'
23978 3' -60.9 NC_005262.1 + 34967 0.68 0.340937
Target:  5'- cGGCGCUCGGCCGCAaGUCGaaGCUccagGCa -3'
miRNA:   3'- -UUGUGGGCCGGCGUaCGGCgaUGG----CG- -5'
23978 3' -60.9 NC_005262.1 + 34720 0.68 0.333085
Target:  5'- cGACGCCgGGUCGagcuucuUGCCGUUguagucgcACCGCu -3'
miRNA:   3'- -UUGUGGgCCGGCgu-----ACGGCGA--------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 34605 0.67 0.360324
Target:  5'- aAACGCCaCaGCCGCGUcgucucgcagaagucGCgCGCcGCCGCg -3'
miRNA:   3'- -UUGUGG-GcCGGCGUA---------------CG-GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 34042 0.69 0.300844
Target:  5'- cGACGCCgCGuuccgggaucgcuuGCCGCGUGCC-C-GCCGCg -3'
miRNA:   3'- -UUGUGG-GC--------------CGGCGUACGGcGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 34019 0.75 0.120076
Target:  5'- uGACGCCgGGCCGCAUcgugcGCCGCgucgAUCGg -3'
miRNA:   3'- -UUGUGGgCCGGCGUA-----CGGCGa---UGGCg -5'
23978 3' -60.9 NC_005262.1 + 33766 0.72 0.169771
Target:  5'- uAACGCCauGCCGaucGCCGCUACCGa -3'
miRNA:   3'- -UUGUGGgcCGGCguaCGGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 32687 0.66 0.43586
Target:  5'- cGCugCCGGCCGCcgGCCu---CCa- -3'
miRNA:   3'- uUGugGGCCGGCGuaCGGcgauGGcg -5'
23978 3' -60.9 NC_005262.1 + 31734 0.67 0.365289
Target:  5'- --gGCCggCGGUCGCAUGUCGCgcaAgCGCa -3'
miRNA:   3'- uugUGG--GCCGGCGUACGGCGa--UgGCG- -5'
23978 3' -60.9 NC_005262.1 + 31622 0.68 0.340937
Target:  5'- uGCACCUGcGCgGCAaGCCGacCUACgGCg -3'
miRNA:   3'- uUGUGGGC-CGgCGUaCGGC--GAUGgCG- -5'
23978 3' -60.9 NC_005262.1 + 31366 0.68 0.340937
Target:  5'- cGCGauCuuGGCCGCGgacgacUGCgGCUGCCGa -3'
miRNA:   3'- uUGU--GggCCGGCGU------ACGgCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 30896 0.66 0.461395
Target:  5'- cGCACCgGGUuugcgauguaggucUGCAUGUCGgCUccuuaGCCGCg -3'
miRNA:   3'- uUGUGGgCCG--------------GCGUACGGC-GA-----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 30102 0.76 0.095018
Target:  5'- cGACACgCCGGCCGcCgcgaagcccacgaucGUGCCGCUGCUGg -3'
miRNA:   3'- -UUGUG-GGCCGGC-G---------------UACGGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 29739 0.72 0.174275
Target:  5'- gGGCG-CgGGCgGCAUGCCGCUcGCUGCc -3'
miRNA:   3'- -UUGUgGgCCGgCGUACGGCGA-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 29636 0.66 0.421118
Target:  5'- cGCAaCCGGCaucggcagcgagcgGCAUGCCGC--CCGCg -3'
miRNA:   3'- uUGUgGGCCGg-------------CGUACGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 29488 0.66 0.454698
Target:  5'- aAGCACaUCaGCCGCAUGgCGau-CCGCg -3'
miRNA:   3'- -UUGUG-GGcCGGCGUACgGCgauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 28355 0.67 0.365289
Target:  5'- cAGCGCCUcaagGGCCGCAacuCCGaCUuCCGCg -3'
miRNA:   3'- -UUGUGGG----CCGGCGUac-GGC-GAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 27955 0.68 0.333085
Target:  5'- --gGCUCGGCCGCcuUGCCGCcguCCuuGCg -3'
miRNA:   3'- uugUGGGCCGGCGu-ACGGCGau-GG--CG- -5'
23978 3' -60.9 NC_005262.1 + 27920 0.67 0.35704
Target:  5'- cAGCACcuugaagucagaCCGGCCGCGcuucUCGCUACCGa -3'
miRNA:   3'- -UUGUG------------GGCCGGCGUac--GGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 27200 0.7 0.242489
Target:  5'- uGGCACUauCGGCCGCGUuCCGUUAcacugauCCGCg -3'
miRNA:   3'- -UUGUGG--GCCGGCGUAcGGCGAU-------GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.