miRNA display CGI


Results 101 - 120 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 27164 0.79 0.05706
Target:  5'- cGGCACaCCGGCCGCAUGgUGUggUGCCGUg -3'
miRNA:   3'- -UUGUG-GGCCGGCGUACgGCG--AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 26807 0.68 0.325367
Target:  5'- aGGCGCCCGGCCuuGCAUcggaauucgagGCCGCgACgGg -3'
miRNA:   3'- -UUGUGGGCCGG--CGUA-----------CGGCGaUGgCg -5'
23978 3' -60.9 NC_005262.1 + 26215 0.66 0.43586
Target:  5'- aGAUugCCGuGCCGUc-GCUGUUGCCGa -3'
miRNA:   3'- -UUGugGGC-CGGCGuaCGGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 25744 0.66 0.445223
Target:  5'- cGCGCa-GGCCgGCAaGCCGCUcacggcCCGCg -3'
miRNA:   3'- uUGUGggCCGG-CGUaCGGCGAu-----GGCG- -5'
23978 3' -60.9 NC_005262.1 + 25480 0.67 0.373669
Target:  5'- cAGCGCCuCGGCCGUcucccgauccUGCgCGaugaUGCCGCa -3'
miRNA:   3'- -UUGUGG-GCCGGCGu---------ACG-GCg---AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 24856 0.68 0.331531
Target:  5'- -uCGCCCGGCuCGCcgcgGUGCUGaauccacuucgGCCGCa -3'
miRNA:   3'- uuGUGGGCCG-GCG----UACGGCga---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 24439 0.66 0.445223
Target:  5'- gAACGCCUGaGCCGUcacgcccgaucgAUGgCGCUGCacgGCa -3'
miRNA:   3'- -UUGUGGGC-CGGCG------------UACgGCGAUGg--CG- -5'
23978 3' -60.9 NC_005262.1 + 24294 0.67 0.373669
Target:  5'- ----gCCGGCgcaGCGUcGCgGCUGCCGCc -3'
miRNA:   3'- uugugGGCCGg--CGUA-CGgCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 24197 0.72 0.178885
Target:  5'- cACGCCCgaGGCgGCA-GCCGCgacGCUGCg -3'
miRNA:   3'- uUGUGGG--CCGgCGUaCGGCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 23845 0.68 0.340937
Target:  5'- --aGgCCGGCaCGCcgcccuUGCCGgUGCCGCc -3'
miRNA:   3'- uugUgGGCCG-GCGu-----ACGGCgAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 23491 0.68 0.333085
Target:  5'- uGCugCCcGCCGCAUcGCCGCcuugUGgCGCu -3'
miRNA:   3'- uUGugGGcCGGCGUA-CGGCG----AUgGCG- -5'
23978 3' -60.9 NC_005262.1 + 23132 0.67 0.390816
Target:  5'- -cCACCCGuucGCCGCA--CCGCgcuucgcaUACCGCu -3'
miRNA:   3'- uuGUGGGC---CGGCGUacGGCG--------AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22997 0.66 0.445223
Target:  5'- gAACGagCUGGCCGUgcggcaugaAUGCgGCUuCCGCg -3'
miRNA:   3'- -UUGUg-GGCCGGCG---------UACGgCGAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22560 0.7 0.245536
Target:  5'- gAACGCCuccauccggccuuagCGGCCGCAUGC-GCggcGCUGCu -3'
miRNA:   3'- -UUGUGG---------------GCCGGCGUACGgCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22328 0.66 0.454698
Target:  5'- uGCGCaggCCGGCCgGCGUggGCgGCgcgGCCGUg -3'
miRNA:   3'- uUGUG---GGCCGG-CGUA--CGgCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22204 0.7 0.262542
Target:  5'- gAACGCCgGGCuCGCGcucgacaagcucacgGCCGC-GCCGCc -3'
miRNA:   3'- -UUGUGGgCCG-GCGUa--------------CGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22203 0.67 0.373669
Target:  5'- cGAUugCCGGCCaCGUGCagcaggucgaCGUUgACCGCg -3'
miRNA:   3'- -UUGugGGCCGGcGUACG----------GCGA-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22132 0.67 0.373669
Target:  5'- cGGCAaucgUCUGGCCGCc-GCgGCUGcCCGCa -3'
miRNA:   3'- -UUGU----GGGCCGGCGuaCGgCGAU-GGCG- -5'
23978 3' -60.9 NC_005262.1 + 21854 0.71 0.198422
Target:  5'- aGAUGCuuGGCgacguugaCGCGUGCCGCUG-CGCg -3'
miRNA:   3'- -UUGUGggCCG--------GCGUACGGCGAUgGCG- -5'
23978 3' -60.9 NC_005262.1 + 21810 0.67 0.390816
Target:  5'- gAGCGCCUugaGGCCGUccuUGCCGau-CUGCg -3'
miRNA:   3'- -UUGUGGG---CCGGCGu--ACGGCgauGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.