miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 60498 0.77 0.086546
Target:  5'- aGACGCCgGGCCGCGcGgCGCagGCCGCc -3'
miRNA:   3'- -UUGUGGgCCGGCGUaCgGCGa-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 10551 0.78 0.071315
Target:  5'- cGACGCgaCCGGCCGCGcgcaGCCGCagcgUACCGCg -3'
miRNA:   3'- -UUGUG--GGCCGGCGUa---CGGCG----AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 27164 0.79 0.05706
Target:  5'- cGGCACaCCGGCCGCAUGgUGUggUGCCGUg -3'
miRNA:   3'- -UUGUG-GGCCGGCGUACgGCG--AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 49760 0.82 0.03341
Target:  5'- cGGCGCCCGcGCCcgagGCuccgGCCGCUGCCGCg -3'
miRNA:   3'- -UUGUGGGC-CGG----CGua--CGGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 16873 0.87 0.015049
Target:  5'- aGGCGCCCGGCCGCGcGCCGg-GCCGCa -3'
miRNA:   3'- -UUGUGGGCCGGCGUaCGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 33766 0.72 0.169771
Target:  5'- uAACGCCauGCCGaucGCCGCUACCGa -3'
miRNA:   3'- -UUGUGGgcCGGCguaCGGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 59140 0.72 0.174275
Target:  5'- --gGCCgGGCCGCGUcGCCGCg--CGCa -3'
miRNA:   3'- uugUGGgCCGGCGUA-CGGCGaugGCG- -5'
23978 3' -60.9 NC_005262.1 + 2865 0.7 0.2555
Target:  5'- --aGCuuGGCCGaaauUGCCGUUgcGCCGCu -3'
miRNA:   3'- uugUGggCCGGCgu--ACGGCGA--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22560 0.7 0.245536
Target:  5'- gAACGCCuccauccggccuuagCGGCCGCAUGC-GCggcGCUGCu -3'
miRNA:   3'- -UUGUGG---------------GCCGGCGUACGgCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48445 0.7 0.243096
Target:  5'- cAugACCaCGcGCgCGUAUGCCGCgcggAUCGCg -3'
miRNA:   3'- -UugUGG-GC-CG-GCGUACGGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 27200 0.7 0.242489
Target:  5'- uGGCACUauCGGCCGCGUuCCGUUAcacugauCCGCg -3'
miRNA:   3'- -UUGUGG--GCCGGCGUAcGGCGAU-------GGCG- -5'
23978 3' -60.9 NC_005262.1 + 21453 0.71 0.219792
Target:  5'- cGAguUCC-GCCGCuuugcGUGCCGCUACUGCu -3'
miRNA:   3'- -UUguGGGcCGGCG-----UACGGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 17539 0.71 0.219792
Target:  5'- gGGCACgCGGUCGCGcgcgagGCgGCaGCCGCg -3'
miRNA:   3'- -UUGUGgGCCGGCGUa-----CGgCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 52624 0.71 0.208871
Target:  5'- aAGCGCaCCGGCU-CGUGgCGCgcgACCGCa -3'
miRNA:   3'- -UUGUG-GGCCGGcGUACgGCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 43055 0.71 0.208871
Target:  5'- --gACCCGGCCgGCA--CCGCgcGCCGCg -3'
miRNA:   3'- uugUGGGCCGG-CGUacGGCGa-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 53709 0.71 0.203588
Target:  5'- --aACCCGGCCGCGUcgaagGCCGUgg-CGCu -3'
miRNA:   3'- uugUGGGCCGGCGUA-----CGGCGaugGCG- -5'
23978 3' -60.9 NC_005262.1 + 55637 0.72 0.188431
Target:  5'- --aGCCgGGCCGCGcGCuCGUgGCCGCg -3'
miRNA:   3'- uugUGGgCCGGCGUaCG-GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 50424 0.72 0.183603
Target:  5'- gAGCGCgagGGCCGCGUGCaCGUcgucgUGCCGCg -3'
miRNA:   3'- -UUGUGgg-CCGGCGUACG-GCG-----AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 11420 0.72 0.182176
Target:  5'- cGCGCCgGGCCGCcgaaggugcgcgacAcGCCGCgcCCGCg -3'
miRNA:   3'- uUGUGGgCCGGCG--------------UaCGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 24197 0.72 0.178885
Target:  5'- cACGCCCgaGGCgGCA-GCCGCgacGCUGCg -3'
miRNA:   3'- uUGUGGG--CCGgCGUaCGGCGa--UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.