Results 61 - 80 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23978 | 3' | -60.9 | NC_005262.1 | + | 55637 | 0.72 | 0.188431 |
Target: 5'- --aGCCgGGCCGCGcGCuCGUgGCCGCg -3' miRNA: 3'- uugUGGgCCGGCGUaCG-GCGaUGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 53709 | 0.71 | 0.203588 |
Target: 5'- --aACCCGGCCGCGUcgaagGCCGUgg-CGCu -3' miRNA: 3'- uugUGGGCCGGCGUA-----CGGCGaugGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 51381 | 0.7 | 0.261895 |
Target: 5'- cGACGCCggccaaGGCCGCGccUGaCCGUgugcACCGCg -3' miRNA: 3'- -UUGUGGg-----CCGGCGU--AC-GGCGa---UGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 22204 | 0.7 | 0.262542 |
Target: 5'- gAACGCCgGGCuCGCGcucgacaagcucacgGCCGC-GCCGCc -3' miRNA: 3'- -UUGUGGgCCG-GCGUa--------------CGGCGaUGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 42991 | 0.69 | 0.271065 |
Target: 5'- cGCGCCgGGCCGCuucguGUcgggccaguucuucgGCCGCUACCu- -3' miRNA: 3'- uUGUGGgCCGGCG-----UA---------------CGGCGAUGGcg -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 12319 | 0.69 | 0.275074 |
Target: 5'- cGGCAUgCGGCU-CGUGCCGCaGCgCGCg -3' miRNA: 3'- -UUGUGgGCCGGcGUACGGCGaUG-GCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 57172 | 0.69 | 0.28186 |
Target: 5'- cGGCgACCCcucGCCGCucGUGUCGCUcCCGCu -3' miRNA: 3'- -UUG-UGGGc--CGGCG--UACGGCGAuGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 1473 | 0.69 | 0.288778 |
Target: 5'- -cCGCCCGcUCGUcUGCCggcGCUGCCGCu -3' miRNA: 3'- uuGUGGGCcGGCGuACGG---CGAUGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 11486 | 0.69 | 0.295829 |
Target: 5'- gAGCACaUgGGCCGCGUcGCCGagcucgGCUGCa -3' miRNA: 3'- -UUGUG-GgCCGGCGUA-CGGCga----UGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 45112 | 0.69 | 0.295829 |
Target: 5'- --aACUCGG-CGgGUGCCGCgaacACCGCg -3' miRNA: 3'- uugUGGGCCgGCgUACGGCGa---UGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 43823 | 0.7 | 0.2555 |
Target: 5'- cGGCGacaCGGCCGCggGCCG--GCCGCg -3' miRNA: 3'- -UUGUgg-GCCGGCGuaCGGCgaUGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 58702 | 0.7 | 0.2555 |
Target: 5'- cAACAagCUGGCgGCAUGCCcgagGCgcugACCGCg -3' miRNA: 3'- -UUGUg-GGCCGgCGUACGG----CGa---UGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 43055 | 0.71 | 0.208871 |
Target: 5'- --gACCCGGCCgGCA--CCGCgcGCCGCg -3' miRNA: 3'- uugUGGGCCGG-CGUacGGCGa-UGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 52624 | 0.71 | 0.208871 |
Target: 5'- aAGCGCaCCGGCU-CGUGgCGCgcgACCGCa -3' miRNA: 3'- -UUGUG-GGCCGGcGUACgGCGa--UGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 17539 | 0.71 | 0.219792 |
Target: 5'- gGGCACgCGGUCGCGcgcgagGCgGCaGCCGCg -3' miRNA: 3'- -UUGUGgGCCGGCGUa-----CGgCGaUGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 21453 | 0.71 | 0.219792 |
Target: 5'- cGAguUCC-GCCGCuuugcGUGCCGCUACUGCu -3' miRNA: 3'- -UUguGGGcCGGCG-----UACGGCGAUGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 27200 | 0.7 | 0.242489 |
Target: 5'- uGGCACUauCGGCCGCGUuCCGUUAcacugauCCGCg -3' miRNA: 3'- -UUGUGG--GCCGGCGUAcGGCGAU-------GGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 48445 | 0.7 | 0.243096 |
Target: 5'- cAugACCaCGcGCgCGUAUGCCGCgcggAUCGCg -3' miRNA: 3'- -UugUGG-GC-CG-GCGUACGGCGa---UGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 22560 | 0.7 | 0.245536 |
Target: 5'- gAACGCCuccauccggccuuagCGGCCGCAUGC-GCggcGCUGCu -3' miRNA: 3'- -UUGUGG---------------GCCGGCGUACGgCGa--UGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 2865 | 0.7 | 0.2555 |
Target: 5'- --aGCuuGGCCGaaauUGCCGUUgcGCCGCu -3' miRNA: 3'- uugUGggCCGGCgu--ACGGCGA--UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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