miRNA display CGI


Results 81 - 100 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 20575 0.68 0.317782
Target:  5'- gAGCAgCCCGGCgaGCA-GCgCGCggcgcGCCGCa -3'
miRNA:   3'- -UUGU-GGGCCGg-CGUaCG-GCGa----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 40560 0.68 0.317782
Target:  5'- cGCGCCgGGCaacaccgGCgGUGCCGCgACCGUc -3'
miRNA:   3'- uUGUGGgCCGg------CG-UACGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 17085 0.68 0.325367
Target:  5'- cGCGCCCGucgacGCgGCggGCCGCgaggagguccACCGCg -3'
miRNA:   3'- uUGUGGGC-----CGgCGuaCGGCGa---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 1473 0.69 0.288778
Target:  5'- -cCGCCCGcUCGUcUGCCggcGCUGCCGCu -3'
miRNA:   3'- uuGUGGGCcGGCGuACGG---CGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 57172 0.69 0.28186
Target:  5'- cGGCgACCCcucGCCGCucGUGUCGCUcCCGCu -3'
miRNA:   3'- -UUG-UGGGc--CGGCG--UACGGCGAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 27200 0.7 0.242489
Target:  5'- uGGCACUauCGGCCGCGUuCCGUUAcacugauCCGCg -3'
miRNA:   3'- -UUGUGG--GCCGGCGUAcGGCGAU-------GGCG- -5'
23978 3' -60.9 NC_005262.1 + 48445 0.7 0.243096
Target:  5'- cAugACCaCGcGCgCGUAUGCCGCgcggAUCGCg -3'
miRNA:   3'- -UugUGG-GC-CG-GCGUACGGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22560 0.7 0.245536
Target:  5'- gAACGCCuccauccggccuuagCGGCCGCAUGC-GCggcGCUGCu -3'
miRNA:   3'- -UUGUGG---------------GCCGGCGUACGgCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 2865 0.7 0.2555
Target:  5'- --aGCuuGGCCGaaauUGCCGUUgcGCCGCu -3'
miRNA:   3'- uugUGggCCGGCgu--ACGGCGA--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 58702 0.7 0.2555
Target:  5'- cAACAagCUGGCgGCAUGCCcgagGCgcugACCGCg -3'
miRNA:   3'- -UUGUg-GGCCGgCGUACGG----CGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 43823 0.7 0.2555
Target:  5'- cGGCGacaCGGCCGCggGCCG--GCCGCg -3'
miRNA:   3'- -UUGUgg-GCCGGCGuaCGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 51381 0.7 0.261895
Target:  5'- cGACGCCggccaaGGCCGCGccUGaCCGUgugcACCGCg -3'
miRNA:   3'- -UUGUGGg-----CCGGCGU--AC-GGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22204 0.7 0.262542
Target:  5'- gAACGCCgGGCuCGCGcucgacaagcucacgGCCGC-GCCGCc -3'
miRNA:   3'- -UUGUGGgCCG-GCGUa--------------CGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 42991 0.69 0.271065
Target:  5'- cGCGCCgGGCCGCuucguGUcgggccaguucuucgGCCGCUACCu- -3'
miRNA:   3'- uUGUGGgCCGGCG-----UA---------------CGGCGAUGGcg -5'
23978 3' -60.9 NC_005262.1 + 12319 0.69 0.275074
Target:  5'- cGGCAUgCGGCU-CGUGCCGCaGCgCGCg -3'
miRNA:   3'- -UUGUGgGCCGGcGUACGGCGaUG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 55008 0.66 0.454698
Target:  5'- cACGCCCGGCaGCGUcaggugcgaGCCGUcgaacUGgCGCg -3'
miRNA:   3'- uUGUGGGCCGgCGUA---------CGGCG-----AUgGCG- -5'
23978 3' -60.9 NC_005262.1 + 59046 0.66 0.454698
Target:  5'- cGGCGgCCGGCUGguUcGaCUGCUGCgCGCc -3'
miRNA:   3'- -UUGUgGGCCGGCguA-C-GGCGAUG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 22328 0.66 0.454698
Target:  5'- uGCGCaggCCGGCCgGCGUggGCgGCgcgGCCGUg -3'
miRNA:   3'- uUGUG---GGCCGG-CGUA--CGgCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 30896 0.66 0.461395
Target:  5'- cGCACCgGGUuugcgauguaggucUGCAUGUCGgCUccuuaGCCGCg -3'
miRNA:   3'- uUGUGGgCCG--------------GCGUACGGC-GA-----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 35717 0.82 0.035356
Target:  5'- -uCGCCC-GCCGCGUGCCGUUGCCGg -3'
miRNA:   3'- uuGUGGGcCGGCGUACGGCGAUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.