Results 101 - 120 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23978 | 3' | -60.9 | NC_005262.1 | + | 51364 | 0.67 | 0.400464 |
Target: 5'- cAGCAgCCGGCgGCcggugagguucagcuUGCCGUccuUACCGUa -3' miRNA: 3'- -UUGUgGGCCGgCGu--------------ACGGCG---AUGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 46725 | 0.67 | 0.39958 |
Target: 5'- cGCugUCGGCCaucaGCGUGCC-CUucAUCGCg -3' miRNA: 3'- uUGugGGCCGG----CGUACGGcGA--UGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 41454 | 0.67 | 0.39958 |
Target: 5'- -uCAgCCGuGCCGUucGUGCCGU--CCGCg -3' miRNA: 3'- uuGUgGGC-CGGCG--UACGGCGauGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 21810 | 0.67 | 0.390816 |
Target: 5'- gAGCGCCUugaGGCCGUccuUGCCGau-CUGCg -3' miRNA: 3'- -UUGUGGG---CCGGCGu--ACGGCgauGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 45426 | 0.67 | 0.390816 |
Target: 5'- gGACGCCCGcGCCGCcuUGCagaccuugcauCGC-GCCGUu -3' miRNA: 3'- -UUGUGGGC-CGGCGu-ACG-----------GCGaUGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 53895 | 0.67 | 0.385619 |
Target: 5'- cGAUGCCCGuGCCGCugucgaccugcaucaGguUGCCGgUAUCGCc -3' miRNA: 3'- -UUGUGGGC-CGGCG---------------U--ACGGCgAUGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 19523 | 0.67 | 0.382179 |
Target: 5'- cAACGCCCaG-CGCuucagAUGCCGCgACUGCg -3' miRNA: 3'- -UUGUGGGcCgGCG-----UACGGCGaUGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 58794 | 0.66 | 0.425693 |
Target: 5'- cAGCGCCuCGG--GCAUGCCGCcagcuugUugCGCg -3' miRNA: 3'- -UUGUGG-GCCggCGUACGGCG-------AugGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 13635 | 0.66 | 0.425693 |
Target: 5'- aAGCAa-CGGUCGCGgccucgaUGCCGCUGCacaCGCu -3' miRNA: 3'- -UUGUggGCCGGCGU-------ACGGCGAUG---GCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 30896 | 0.66 | 0.461395 |
Target: 5'- cGCACCgGGUuugcgauguaggucUGCAUGUCGgCUccuuaGCCGCg -3' miRNA: 3'- uUGUGGgCCG--------------GCGUACGGC-GA-----UGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 22328 | 0.66 | 0.454698 |
Target: 5'- uGCGCaggCCGGCCgGCGUggGCgGCgcgGCCGUg -3' miRNA: 3'- uUGUG---GGCCGG-CGUA--CGgCGa--UGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 59046 | 0.66 | 0.454698 |
Target: 5'- cGGCGgCCGGCUGguUcGaCUGCUGCgCGCc -3' miRNA: 3'- -UUGUgGGCCGGCguA-C-GGCGAUG-GCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 55008 | 0.66 | 0.454698 |
Target: 5'- cACGCCCGGCaGCGUcaggugcgaGCCGUcgaacUGgCGCg -3' miRNA: 3'- uUGUGGGCCGgCGUA---------CGGCG-----AUgGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 43170 | 0.66 | 0.454698 |
Target: 5'- --uGCCCGGUCagGUcgaugAUGaaGCUGCCGCg -3' miRNA: 3'- uugUGGGCCGG--CG-----UACggCGAUGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 11060 | 0.66 | 0.445223 |
Target: 5'- cGGCGuuCCCGGCgCGCcgaacagcgcgaAUGCCuGCUGCgCGUa -3' miRNA: 3'- -UUGU--GGGCCG-GCG------------UACGG-CGAUG-GCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 26215 | 0.66 | 0.43586 |
Target: 5'- aGAUugCCGuGCCGUc-GCUGUUGCCGa -3' miRNA: 3'- -UUGugGGC-CGGCGuaCGGCGAUGGCg -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 35086 | 0.66 | 0.43586 |
Target: 5'- gGACggGCCCGcGCUGC-UGCCcgGCUGCCu- -3' miRNA: 3'- -UUG--UGGGC-CGGCGuACGG--CGAUGGcg -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 2678 | 0.66 | 0.43586 |
Target: 5'- cGACACCCgcaugaagGGCCGCcgGCuCGUcuCCGa -3' miRNA: 3'- -UUGUGGG--------CCGGCGuaCG-GCGauGGCg -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 49790 | 0.66 | 0.427531 |
Target: 5'- -cCGCCCGGCaCGCcgucgcgguucagguUGCgCGC-GCCGCc -3' miRNA: 3'- uuGUGGGCCG-GCGu--------------ACG-GCGaUGGCG- -5' |
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23978 | 3' | -60.9 | NC_005262.1 | + | 35492 | 0.66 | 0.426611 |
Target: 5'- -uCGCCgGGCUggaGCGUGCgCGCgguauugagcGCCGCg -3' miRNA: 3'- uuGUGGgCCGG---CGUACG-GCGa---------UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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