miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 21810 0.67 0.390816
Target:  5'- gAGCGCCUugaGGCCGUccuUGCCGau-CUGCg -3'
miRNA:   3'- -UUGUGGG---CCGGCGu--ACGGCgauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 51364 0.67 0.400464
Target:  5'- cAGCAgCCGGCgGCcggugagguucagcuUGCCGUccuUACCGUa -3'
miRNA:   3'- -UUGUgGGCCGgCGu--------------ACGGCG---AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 49790 0.66 0.427531
Target:  5'- -cCGCCCGGCaCGCcgucgcgguucagguUGCgCGC-GCCGCc -3'
miRNA:   3'- uuGUGGGCCG-GCGu--------------ACG-GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 59046 0.66 0.454698
Target:  5'- cGGCGgCCGGCUGguUcGaCUGCUGCgCGCc -3'
miRNA:   3'- -UUGUgGGCCGGCguA-C-GGCGAUG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 27920 0.67 0.35704
Target:  5'- cAGCACcuugaagucagaCCGGCCGCGcuucUCGCUACCGa -3'
miRNA:   3'- -UUGUG------------GGCCGGCGUac--GGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 60290 0.67 0.373669
Target:  5'- cGACcuCgCCGGCCgGCuccuUGCCGgUUGCCGCc -3'
miRNA:   3'- -UUGu-G-GGCCGG-CGu---ACGGC-GAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 53768 0.66 0.41116
Target:  5'- cGCGCCCGGCUGauagAUGCCcucgggcagguugGCgaucgccuuggcgaaUGCCGCg -3'
miRNA:   3'- uUGUGGGCCGGCg---UACGG-------------CG---------------AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22328 0.66 0.454698
Target:  5'- uGCGCaggCCGGCCgGCGUggGCgGCgcgGCCGUg -3'
miRNA:   3'- uUGUG---GGCCGG-CGUA--CGgCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 40425 0.67 0.382179
Target:  5'- cAGCGCgCCGGCCGUGaGCCGaUGCUcgaaGCg -3'
miRNA:   3'- -UUGUG-GGCCGGCGUaCGGCgAUGG----CG- -5'
23978 3' -60.9 NC_005262.1 + 30896 0.66 0.461395
Target:  5'- cGCACCgGGUuugcgauguaggucUGCAUGUCGgCUccuuaGCCGCg -3'
miRNA:   3'- uUGUGGgCCG--------------GCGUACGGC-GA-----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 5397 0.66 0.408469
Target:  5'- -cCugCCGGCCaGCuccGaCCGCcucgACCGCg -3'
miRNA:   3'- uuGugGGCCGG-CGua-C-GGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 45426 0.67 0.390816
Target:  5'- gGACGCCCGcGCCGCcuUGCagaccuugcauCGC-GCCGUu -3'
miRNA:   3'- -UUGUGGGC-CGGCGu-ACG-----------GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48430 0.66 0.424775
Target:  5'- cAGCGCCgGGUCGguCGUGCCGagcuucuucugGCCGUa -3'
miRNA:   3'- -UUGUGGgCCGGC--GUACGGCga---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 35492 0.66 0.426611
Target:  5'- -uCGCCgGGCUggaGCGUGCgCGCgguauugagcGCCGCg -3'
miRNA:   3'- uuGUGGgCCGG---CGUACG-GCGa---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 26215 0.66 0.43586
Target:  5'- aGAUugCCGuGCCGUc-GCUGUUGCCGa -3'
miRNA:   3'- -UUGugGGC-CGGCGuaCGGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 55008 0.66 0.454698
Target:  5'- cACGCCCGGCaGCGUcaggugcgaGCCGUcgaacUGgCGCg -3'
miRNA:   3'- uUGUGGGCCGgCGUA---------CGGCG-----AUgGCG- -5'
23978 3' -60.9 NC_005262.1 + 4756 0.68 0.340937
Target:  5'- --gAUCCGGCCGCGgcaugGCUGUUcaACCGa -3'
miRNA:   3'- uugUGGGCCGGCGUa----CGGCGA--UGGCg -5'
23978 3' -60.9 NC_005262.1 + 12362 0.67 0.35704
Target:  5'- --aGCUCGGCuCGCcgGCCGCgAUCGa -3'
miRNA:   3'- uugUGGGCCG-GCGuaCGGCGaUGGCg -5'
23978 3' -60.9 NC_005262.1 + 53703 0.67 0.365289
Target:  5'- cGACGCCCGGCuCGggaacgacCGUGUacuCGUUugCGCg -3'
miRNA:   3'- -UUGUGGGCCG-GC--------GUACG---GCGAugGCG- -5'
23978 3' -60.9 NC_005262.1 + 22203 0.67 0.373669
Target:  5'- cGAUugCCGGCCaCGUGCagcaggucgaCGUUgACCGCg -3'
miRNA:   3'- -UUGugGGCCGGcGUACG----------GCGA-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.