miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 34605 0.67 0.360324
Target:  5'- aAACGCCaCaGCCGCGUcgucucgcagaagucGCgCGCcGCCGCg -3'
miRNA:   3'- -UUGUGG-GcCGGCGUA---------------CG-GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 53768 0.66 0.41116
Target:  5'- cGCGCCCGGCUGauagAUGCCcucgggcagguugGCgaucgccuuggcgaaUGCCGCg -3'
miRNA:   3'- uUGUGGGCCGGCg---UACGG-------------CG---------------AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22328 0.66 0.454698
Target:  5'- uGCGCaggCCGGCCgGCGUggGCgGCgcgGCCGUg -3'
miRNA:   3'- uUGUG---GGCCGG-CGUA--CGgCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 61251 0.67 0.364459
Target:  5'- cGCGCCCGucaGCuCGCccGCCGCcgcgaucUGCUGCg -3'
miRNA:   3'- uUGUGGGC---CG-GCGuaCGGCG-------AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 30896 0.66 0.461395
Target:  5'- cGCACCgGGUuugcgauguaggucUGCAUGUCGgCUccuuaGCCGCg -3'
miRNA:   3'- uUGUGGgCCG--------------GCGUACGGC-GA-----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 6226 0.69 0.300844
Target:  5'- cAGCAaaauCCCGGCCGCgcAcaucgaggcgacugUGCCGCcguuCCGCa -3'
miRNA:   3'- -UUGU----GGGCCGGCG--U--------------ACGGCGau--GGCG- -5'
23978 3' -60.9 NC_005262.1 + 55008 0.66 0.454698
Target:  5'- cACGCCCGGCaGCGUcaggugcgaGCCGUcgaacUGgCGCg -3'
miRNA:   3'- uUGUGGGCCGgCGUA---------CGGCG-----AUgGCG- -5'
23978 3' -60.9 NC_005262.1 + 63366 0.68 0.317782
Target:  5'- cAGCAgCCGGCCgucaaGCAggcgGCgGCUGCCa- -3'
miRNA:   3'- -UUGUgGGCCGG-----CGUa---CGgCGAUGGcg -5'
23978 3' -60.9 NC_005262.1 + 17857 0.68 0.324602
Target:  5'- uGCGCUCGGCCucgaauucgagcaGCGUGUCGU--CCGCc -3'
miRNA:   3'- uUGUGGGCCGG-------------CGUACGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 12402 0.68 0.333085
Target:  5'- uGCGgCaCGaGCCGCAUGCCGUcgaacacguUGCCGa -3'
miRNA:   3'- uUGUgG-GC-CGGCGUACGGCG---------AUGGCg -5'
23978 3' -60.9 NC_005262.1 + 21724 0.68 0.333085
Target:  5'- -cCAUCUGGCCGUc-GCCGUcGCCGUc -3'
miRNA:   3'- uuGUGGGCCGGCGuaCGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 4756 0.68 0.340937
Target:  5'- --gAUCCGGCCGCGgcaugGCUGUUcaACCGa -3'
miRNA:   3'- uugUGGGCCGGCGUa----CGGCGA--UGGCg -5'
23978 3' -60.9 NC_005262.1 + 12362 0.67 0.35704
Target:  5'- --aGCUCGGCuCGCcgGCCGCgAUCGa -3'
miRNA:   3'- uugUGGGCCG-GCGuaCGGCGaUGGCg -5'
23978 3' -60.9 NC_005262.1 + 24294 0.67 0.373669
Target:  5'- ----gCCGGCgcaGCGUcGCgGCUGCCGCc -3'
miRNA:   3'- uugugGGCCGg--CGUA-CGgCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 40425 0.67 0.382179
Target:  5'- cAGCGCgCCGGCCGUGaGCCGaUGCUcgaaGCg -3'
miRNA:   3'- -UUGUG-GGCCGGCGUaCGGCgAUGG----CG- -5'
23978 3' -60.9 NC_005262.1 + 21810 0.67 0.390816
Target:  5'- gAGCGCCUugaGGCCGUccuUGCCGau-CUGCg -3'
miRNA:   3'- -UUGUGGG---CCGGCGu--ACGGCgauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 51364 0.67 0.400464
Target:  5'- cAGCAgCCGGCgGCcggugagguucagcuUGCCGUccuUACCGUa -3'
miRNA:   3'- -UUGUgGGCCGgCGu--------------ACGGCG---AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48430 0.66 0.424775
Target:  5'- cAGCGCCgGGUCGguCGUGCCGagcuucuucugGCCGUa -3'
miRNA:   3'- -UUGUGGgCCGGC--GUACGGCga---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 35492 0.66 0.426611
Target:  5'- -uCGCCgGGCUggaGCGUGCgCGCgguauugagcGCCGCg -3'
miRNA:   3'- uuGUGGgCCGG---CGUACG-GCGa---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 26215 0.66 0.43586
Target:  5'- aGAUugCCGuGCCGUc-GCUGUUGCCGa -3'
miRNA:   3'- -UUGugGGC-CGGCGuaCGGCGAUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.