miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 12362 0.67 0.35704
Target:  5'- --aGCUCGGCuCGCcgGCCGCgAUCGa -3'
miRNA:   3'- uugUGGGCCG-GCGuaCGGCGaUGGCg -5'
23978 3' -60.9 NC_005262.1 + 31366 0.68 0.340937
Target:  5'- cGCGauCuuGGCCGCGgacgacUGCgGCUGCCGa -3'
miRNA:   3'- uUGU--GggCCGGCGU------ACGgCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 43170 0.66 0.454698
Target:  5'- --uGCCCGGUCagGUcgaugAUGaaGCUGCCGCg -3'
miRNA:   3'- uugUGGGCCGG--CG-----UACggCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 35086 0.66 0.43586
Target:  5'- gGACggGCCCGcGCUGC-UGCCcgGCUGCCu- -3'
miRNA:   3'- -UUG--UGGGC-CGGCGuACGG--CGAUGGcg -5'
23978 3' -60.9 NC_005262.1 + 13635 0.66 0.425693
Target:  5'- aAGCAa-CGGUCGCGgccucgaUGCCGCUGCacaCGCu -3'
miRNA:   3'- -UUGUggGCCGGCGU-------ACGGCGAUG---GCG- -5'
23978 3' -60.9 NC_005262.1 + 2824 0.66 0.41748
Target:  5'- cGCAUCCGGgaccucgaggCGCAggGCgagCGCUACCGCa -3'
miRNA:   3'- uUGUGGGCCg---------GCGUa-CG---GCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 46725 0.67 0.39958
Target:  5'- cGCugUCGGCCaucaGCGUGCC-CUucAUCGCg -3'
miRNA:   3'- uUGugGGCCGG----CGUACGGcGA--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 45426 0.67 0.390816
Target:  5'- gGACGCCCGcGCCGCcuUGCagaccuugcauCGC-GCCGUu -3'
miRNA:   3'- -UUGUGGGC-CGGCGu-ACG-----------GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 60290 0.67 0.373669
Target:  5'- cGACcuCgCCGGCCgGCuccuUGCCGgUUGCCGCc -3'
miRNA:   3'- -UUGu-G-GGCCGG-CGu---ACGGC-GAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 25480 0.67 0.373669
Target:  5'- cAGCGCCuCGGCCGUcucccgauccUGCgCGaugaUGCCGCa -3'
miRNA:   3'- -UUGUGG-GCCGGCGu---------ACG-GCg---AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 58724 0.74 0.141068
Target:  5'- cGCGCCCGGCCGCucgacUGCCGa-GCCu- -3'
miRNA:   3'- uUGUGGGCCGGCGu----ACGGCgaUGGcg -5'
23978 3' -60.9 NC_005262.1 + 40633 0.73 0.152782
Target:  5'- --uGCCCGGCgCGUAagaGCCGCccGCCGCg -3'
miRNA:   3'- uugUGGGCCG-GCGUa--CGGCGa-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 34720 0.68 0.333085
Target:  5'- cGACGCCgGGUCGagcuucuUGCCGUUguagucgcACCGCu -3'
miRNA:   3'- -UUGUGGgCCGGCgu-----ACGGCGA--------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 24856 0.68 0.331531
Target:  5'- -uCGCCCGGCuCGCcgcgGUGCUGaauccacuucgGCCGCa -3'
miRNA:   3'- uuGUGGGCCG-GCG----UACGGCga---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 63366 0.68 0.317782
Target:  5'- cAGCAgCCGGCCgucaaGCAggcgGCgGCUGCCa- -3'
miRNA:   3'- -UUGUgGGCCGG-----CGUa---CGgCGAUGGcg -5'
23978 3' -60.9 NC_005262.1 + 6226 0.69 0.300844
Target:  5'- cAGCAaaauCCCGGCCGCgcAcaucgaggcgacugUGCCGCcguuCCGCa -3'
miRNA:   3'- -UUGU----GGGCCGGCG--U--------------ACGGCGau--GGCG- -5'
23978 3' -60.9 NC_005262.1 + 16757 0.69 0.275074
Target:  5'- -uCGCCCGGCUGCGgccacuugaacuUGUCGU--CCGCg -3'
miRNA:   3'- uuGUGGGCCGGCGU------------ACGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 378 0.7 0.261895
Target:  5'- cGACGCCU-GUCGCAaggaGCCGgaGCCGCg -3'
miRNA:   3'- -UUGUGGGcCGGCGUa---CGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 57761 0.72 0.19337
Target:  5'- cGCGCCCGGCgCGCgagaagucgaucGUGCCGCcgAUCGa -3'
miRNA:   3'- uUGUGGGCCG-GCG------------UACGGCGa-UGGCg -5'
23978 3' -60.9 NC_005262.1 + 4664 0.72 0.169771
Target:  5'- cACGCCCGaGCaGCGccGCCGCUGgCGCg -3'
miRNA:   3'- uUGUGGGC-CGgCGUa-CGGCGAUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.