miRNA display CGI


Results 81 - 100 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 48430 0.66 0.424775
Target:  5'- cAGCGCCgGGUCGguCGUGCCGagcuucuucugGCCGUa -3'
miRNA:   3'- -UUGUGGgCCGGC--GUACGGCga---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 35492 0.66 0.426611
Target:  5'- -uCGCCgGGCUggaGCGUGCgCGCgguauugagcGCCGCg -3'
miRNA:   3'- uuGUGGgCCGG---CGUACG-GCGa---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 34042 0.69 0.300844
Target:  5'- cGACGCCgCGuuccgggaucgcuuGCCGCGUGCC-C-GCCGCg -3'
miRNA:   3'- -UUGUGG-GC--------------CGGCGUACGGcGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 16757 0.69 0.275074
Target:  5'- -uCGCCCGGCUGCGgccacuugaacuUGUCGU--CCGCg -3'
miRNA:   3'- uuGUGGGCCGGCGU------------ACGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 23845 0.68 0.340937
Target:  5'- --aGgCCGGCaCGCcgcccuUGCCGgUGCCGCc -3'
miRNA:   3'- uugUgGGCCG-GCGu-----ACGGCgAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 1121 0.68 0.340937
Target:  5'- -cCGCCucuugcucugCGGCCGC-UGCgggcuucgaUGCUGCCGCg -3'
miRNA:   3'- uuGUGG----------GCCGGCGuACG---------GCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 58970 0.68 0.340937
Target:  5'- -cCAgCCGGCCGCcgGCgGCcucacgccucCCGCg -3'
miRNA:   3'- uuGUgGGCCGGCGuaCGgCGau--------GGCG- -5'
23978 3' -60.9 NC_005262.1 + 43823 0.7 0.2555
Target:  5'- cGGCGacaCGGCCGCggGCCG--GCCGCg -3'
miRNA:   3'- -UUGUgg-GCCGGCGuaCGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 60177 0.67 0.35704
Target:  5'- aGGCGCUCGGCCaGUggGCgGCaACCGg -3'
miRNA:   3'- -UUGUGGGCCGG-CGuaCGgCGaUGGCg -5'
23978 3' -60.9 NC_005262.1 + 31734 0.67 0.365289
Target:  5'- --gGCCggCGGUCGCAUGUCGCgcaAgCGCa -3'
miRNA:   3'- uugUGG--GCCGGCGUACGGCGa--UgGCG- -5'
23978 3' -60.9 NC_005262.1 + 58702 0.7 0.2555
Target:  5'- cAACAagCUGGCgGCAUGCCcgagGCgcugACCGCg -3'
miRNA:   3'- -UUGUg-GGCCGgCGUACGG----CGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 2865 0.7 0.2555
Target:  5'- --aGCuuGGCCGaaauUGCCGUUgcGCCGCu -3'
miRNA:   3'- uugUGggCCGGCgu--ACGGCGA--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22560 0.7 0.245536
Target:  5'- gAACGCCuccauccggccuuagCGGCCGCAUGC-GCggcGCUGCu -3'
miRNA:   3'- -UUGUGG---------------GCCGGCGUACGgCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 51187 0.67 0.373669
Target:  5'- cGACgACgCGGCgGCccGCUGgaGCCGCg -3'
miRNA:   3'- -UUG-UGgGCCGgCGuaCGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 15893 0.67 0.373669
Target:  5'- --gAUCC-GCCGCGUGCgCGCgacguggcGCCGCg -3'
miRNA:   3'- uugUGGGcCGGCGUACG-GCGa-------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 36054 0.67 0.373669
Target:  5'- uACGCCCGGUac--UGCCaacCUGCCGCa -3'
miRNA:   3'- uUGUGGGCCGgcguACGGc--GAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48633 0.67 0.365289
Target:  5'- --aGCCCGGCCGCuucaagGUGCUGa---CGCa -3'
miRNA:   3'- uugUGGGCCGGCG------UACGGCgaugGCG- -5'
23978 3' -60.9 NC_005262.1 + 28355 0.67 0.365289
Target:  5'- cAGCGCCUcaagGGCCGCAacuCCGaCUuCCGCg -3'
miRNA:   3'- -UUGUGGG----CCGGCGUac-GGC-GAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 33766 0.72 0.169771
Target:  5'- uAACGCCauGCCGaucGCCGCUACCGa -3'
miRNA:   3'- -UUGUGGgcCGGCguaCGGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 10780 0.73 0.161075
Target:  5'- cGCGCCgGGCgCGCGguacUGCUgcgcgaGCUGCCGCg -3'
miRNA:   3'- uUGUGGgCCG-GCGU----ACGG------CGAUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.