miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 32687 0.66 0.43586
Target:  5'- cGCugCCGGCCGCcgGCCu---CCa- -3'
miRNA:   3'- uUGugGGCCGGCGuaCGGcgauGGcg -5'
23978 3' -60.9 NC_005262.1 + 44681 0.66 0.43493
Target:  5'- cGCGCCCGcGCCcgauccgaacgugGCAUcGCCGCg--CGCg -3'
miRNA:   3'- uUGUGGGC-CGG-------------CGUA-CGGCGaugGCG- -5'
23978 3' -60.9 NC_005262.1 + 49790 0.66 0.427531
Target:  5'- -cCGCCCGGCaCGCcgucgcgguucagguUGCgCGC-GCCGCc -3'
miRNA:   3'- uuGUGGGCCG-GCGu--------------ACG-GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 13385 0.66 0.426611
Target:  5'- uGCGCCUGGgCGCGcGCauccacgaGCU-CCGCg -3'
miRNA:   3'- uUGUGGGCCgGCGUaCGg-------CGAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 51124 0.66 0.426611
Target:  5'- cGACGCgCCGGUCGaCAaGgCGCUcgacGCCGUg -3'
miRNA:   3'- -UUGUG-GGCCGGC-GUaCgGCGA----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 35492 0.66 0.426611
Target:  5'- -uCGCCgGGCUggaGCGUGCgCGCgguauugagcGCCGCg -3'
miRNA:   3'- uuGUGGgCCGG---CGUACG-GCGa---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 13635 0.66 0.425693
Target:  5'- aAGCAa-CGGUCGCGgccucgaUGCCGCUGCacaCGCu -3'
miRNA:   3'- -UUGUggGCCGGCGU-------ACGGCGAUG---GCG- -5'
23978 3' -60.9 NC_005262.1 + 58794 0.66 0.425693
Target:  5'- cAGCGCCuCGG--GCAUGCCGCcagcuugUugCGCg -3'
miRNA:   3'- -UUGUGG-GCCggCGUACGGCG-------AugGCG- -5'
23978 3' -60.9 NC_005262.1 + 48430 0.66 0.424775
Target:  5'- cAGCGCCgGGUCGguCGUGCCGagcuucuucugGCCGUa -3'
miRNA:   3'- -UUGUGGgCCGGC--GUACGGCga---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 29636 0.66 0.421118
Target:  5'- cGCAaCCGGCaucggcagcgagcgGCAUGCCGC--CCGCg -3'
miRNA:   3'- uUGUgGGCCGg-------------CGUACGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 2066 0.66 0.41748
Target:  5'- cACACCaCuGCCaacacgGCAUGCCGCaucUGCCGg -3'
miRNA:   3'- uUGUGG-GcCGG------CGUACGGCG---AUGGCg -5'
23978 3' -60.9 NC_005262.1 + 2824 0.66 0.41748
Target:  5'- cGCAUCCGGgaccucgaggCGCAggGCgagCGCUACCGCa -3'
miRNA:   3'- uUGUGGGCCg---------GCGUa-CG---GCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 50840 0.66 0.41748
Target:  5'- cACGCUCGGCaucccgcgCGCAgaaaUGCCGCaggUGCCGa -3'
miRNA:   3'- uUGUGGGCCG--------GCGU----ACGGCG---AUGGCg -5'
23978 3' -60.9 NC_005262.1 + 20452 0.66 0.41748
Target:  5'- cGGCACCgucGCCGCGUggGCUGUU-CCGCa -3'
miRNA:   3'- -UUGUGGgc-CGGCGUA--CGGCGAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48022 0.66 0.41748
Target:  5'- cAACACCCaGaccaCGCAgcagccgGCCGCgcCCGCn -3'
miRNA:   3'- -UUGUGGGcCg---GCGUa------CGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 55161 0.66 0.41748
Target:  5'- -cUACCCGGCCGCGaacaucaugGUCGCggACgaGCa -3'
miRNA:   3'- uuGUGGGCCGGCGUa--------CGGCGa-UGg-CG- -5'
23978 3' -60.9 NC_005262.1 + 62401 0.66 0.41748
Target:  5'- uAGCGCCCGcCCGCGgauugugguuaUGUaaCGCaACCGCg -3'
miRNA:   3'- -UUGUGGGCcGGCGU-----------ACG--GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 14044 0.66 0.416573
Target:  5'- gGACGCCCaauauuucggaguGGCC-CAacGCCGCcGCCGUg -3'
miRNA:   3'- -UUGUGGG-------------CCGGcGUa-CGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 53768 0.66 0.41116
Target:  5'- cGCGCCCGGCUGauagAUGCCcucgggcagguugGCgaucgccuuggcgaaUGCCGCg -3'
miRNA:   3'- uUGUGGGCCGGCg---UACGG-------------CG---------------AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 16278 0.66 0.408469
Target:  5'- cAAUGCCUuGCUGCGcGCCGCUcGCgGCg -3'
miRNA:   3'- -UUGUGGGcCGGCGUaCGGCGA-UGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.