Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23979 | 3' | -59.5 | NC_005262.1 | + | 59231 | 0.69 | 0.365452 |
Target: 5'- cUCcaugCGCGCGGcgacGCGGCCCGGcCGGu -3' miRNA: 3'- aAGa---GCGCGCUca--UGCCGGGCCuGUC- -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 57274 | 0.66 | 0.534879 |
Target: 5'- -gCUCGCGC-AGcucACGGCCCGcGuGCAGc -3' miRNA: 3'- aaGAGCGCGcUCa--UGCCGGGC-C-UGUC- -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 55017 | 0.67 | 0.455216 |
Target: 5'- -cCUCGCGCacgcGGU-CGGCgCGGGCAa -3' miRNA: 3'- aaGAGCGCGc---UCAuGCCGgGCCUGUc -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 54287 | 0.75 | 0.152369 |
Target: 5'- -gCUCGCGCGGGcgcuggagcACGcGCUCGGACAGg -3' miRNA: 3'- aaGAGCGCGCUCa--------UGC-CGGGCCUGUC- -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 49898 | 0.69 | 0.365452 |
Target: 5'- --aUCGCGCGGccgauCGGgCCGGACGGu -3' miRNA: 3'- aagAGCGCGCUcau--GCCgGGCCUGUC- -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 48175 | 0.71 | 0.274925 |
Target: 5'- aUCaUCGCGCGu---CGGCgCCGGGCGGc -3' miRNA: 3'- aAG-AGCGCGCucauGCCG-GGCCUGUC- -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 41593 | 0.67 | 0.445702 |
Target: 5'- ----gGUGUGGGUGUGGCCCGGAuCGGu -3' miRNA: 3'- aagagCGCGCUCAUGCCGGGCCU-GUC- -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 28720 | 0.71 | 0.26825 |
Target: 5'- gUUC-CGcCGCGAGgccGCGcGCCCGGACGc -3' miRNA: 3'- -AAGaGC-GCGCUCa--UGC-CGGGCCUGUc -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 23456 | 0.66 | 0.524619 |
Target: 5'- -aCUgGCGCaugcGCGGCCUGGACGa -3' miRNA: 3'- aaGAgCGCGcucaUGCCGGGCCUGUc -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 17548 | 0.69 | 0.373864 |
Target: 5'- gUCgCGCGCGAG-GCGGCagCCGcGGCGGc -3' miRNA: 3'- aAGaGCGCGCUCaUGCCG--GGC-CUGUC- -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 17006 | 0.68 | 0.391077 |
Target: 5'- cUCUCcuucaugugGUGCG-GUGCGGUgCGGGCGGu -3' miRNA: 3'- aAGAG---------CGCGCuCAUGCCGgGCCUGUC- -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 16974 | 0.67 | 0.455216 |
Target: 5'- ----nGUGCGguguGGUGCGGCCCGGcgcGCGGc -3' miRNA: 3'- aagagCGCGC----UCAUGCCGGGCC---UGUC- -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 11511 | 0.67 | 0.445702 |
Target: 5'- gUgUCGCGCaccuucgGCGGCCCGGcGCGGc -3' miRNA: 3'- aAgAGCGCGcuca---UGCCGGGCC-UGUC- -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 10873 | 0.68 | 0.399876 |
Target: 5'- -gCUCGCGCaGcAGUaccGCGcGCCCGGcGCGGg -3' miRNA: 3'- aaGAGCGCG-C-UCA---UGC-CGGGCC-UGUC- -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 9063 | 0.66 | 0.504332 |
Target: 5'- ---aUGCGCGGGguugGCuGGCuCCGGAUGGg -3' miRNA: 3'- aagaGCGCGCUCa---UG-CCG-GGCCUGUC- -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 7307 | 1.06 | 0.00072 |
Target: 5'- gUUCUCGCGCGAGUACGGCCCGGACAGa -3' miRNA: 3'- -AAGAGCGCGCUCAUGCCGGGCCUGUC- -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 6747 | 0.66 | 0.545208 |
Target: 5'- aUCUCGCGCGccucguuGUGCucguGGCC-GGGCAc -3' miRNA: 3'- aAGAGCGCGCu------CAUG----CCGGgCCUGUc -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 4569 | 0.67 | 0.464838 |
Target: 5'- aUCUCGCGCcAGcgGCGGCgcugcUCGGGCGu -3' miRNA: 3'- aAGAGCGCGcUCa-UGCCG-----GGCCUGUc -5' |
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23979 | 3' | -59.5 | NC_005262.1 | + | 2349 | 0.69 | 0.373864 |
Target: 5'- -aCUUGCGCGGGccgucaucgacGCGGCCCGaGACu- -3' miRNA: 3'- aaGAGCGCGCUCa----------UGCCGGGC-CUGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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