miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23979 5' -57 NC_005262.1 + 32460 0.66 0.660532
Target:  5'- uUUCC-UCCCaaucGAagcggaggccguUGGCCGUGCcgUAGGCg -3'
miRNA:   3'- -AAGGcAGGG----CU------------AUCGGCGCGa-AUCCG- -5'
23979 5' -57 NC_005262.1 + 27041 0.66 0.660532
Target:  5'- cUUCGUCggUCGGgaugUGGUCGCGgaUAGGCg -3'
miRNA:   3'- aAGGCAG--GGCU----AUCGGCGCgaAUCCG- -5'
23979 5' -57 NC_005262.1 + 54303 0.66 0.649697
Target:  5'- -gUCGUCuuGAUcuccGGCuCGCGC--GGGCg -3'
miRNA:   3'- aaGGCAGggCUA----UCG-GCGCGaaUCCG- -5'
23979 5' -57 NC_005262.1 + 23563 0.66 0.649697
Target:  5'- -aCCG-CCC----GCCGCGCgcGGGCg -3'
miRNA:   3'- aaGGCaGGGcuauCGGCGCGaaUCCG- -5'
23979 5' -57 NC_005262.1 + 46457 0.66 0.649697
Target:  5'- -gCCGgaCCCGAauGCCGCGCc--GGCc -3'
miRNA:   3'- aaGGCa-GGGCUauCGGCGCGaauCCG- -5'
23979 5' -57 NC_005262.1 + 23669 0.66 0.649697
Target:  5'- aUCCGUggaugccgCCCGA--GCgGCGCgugUGGGUc -3'
miRNA:   3'- aAGGCA--------GGGCUauCGgCGCGa--AUCCG- -5'
23979 5' -57 NC_005262.1 + 1388 0.66 0.649697
Target:  5'- -aCCGUCacugcucaggCUGAUAGCCGUGCU---GCg -3'
miRNA:   3'- aaGGCAG----------GGCUAUCGGCGCGAaucCG- -5'
23979 5' -57 NC_005262.1 + 44607 0.66 0.638846
Target:  5'- aUUCCG-CUCGAgcgcgagaAGcCCGCGCgcaAGGCa -3'
miRNA:   3'- -AAGGCaGGGCUa-------UC-GGCGCGaa-UCCG- -5'
23979 5' -57 NC_005262.1 + 52920 0.66 0.637761
Target:  5'- aUCCG-CUCGAUcuacgacGGCCuGCGCcgccUGGGCu -3'
miRNA:   3'- aAGGCaGGGCUA-------UCGG-CGCGa---AUCCG- -5'
23979 5' -57 NC_005262.1 + 34296 0.66 0.627989
Target:  5'- -gUCG-CCCGA-AGCCGCGaucgcGGGCg -3'
miRNA:   3'- aaGGCaGGGCUaUCGGCGCgaa--UCCG- -5'
23979 5' -57 NC_005262.1 + 40456 0.67 0.606296
Target:  5'- -aCCGacaUCCCG---GCCGUGCaUGGGCc -3'
miRNA:   3'- aaGGC---AGGGCuauCGGCGCGaAUCCG- -5'
23979 5' -57 NC_005262.1 + 20448 0.67 0.606296
Target:  5'- gUUCCGgcaCCGuc-GCCGCGU--GGGCu -3'
miRNA:   3'- -AAGGCag-GGCuauCGGCGCGaaUCCG- -5'
23979 5' -57 NC_005262.1 + 20595 0.67 0.595477
Target:  5'- -gUCGUCgCGAgcGCCGCGCcgauGGUg -3'
miRNA:   3'- aaGGCAGgGCUauCGGCGCGaau-CCG- -5'
23979 5' -57 NC_005262.1 + 25450 0.67 0.595477
Target:  5'- -cCUG-CCCGAggcGCUGCGCg-AGGCg -3'
miRNA:   3'- aaGGCaGGGCUau-CGGCGCGaaUCCG- -5'
23979 5' -57 NC_005262.1 + 12158 0.67 0.595477
Target:  5'- gUUUCGaaCCUGAaGGCCGCGCUgucugcgcGGCa -3'
miRNA:   3'- -AAGGCa-GGGCUaUCGGCGCGAau------CCG- -5'
23979 5' -57 NC_005262.1 + 51197 0.67 0.584689
Target:  5'- --gCGgCCCGcuggAGCCGCGC--GGGCg -3'
miRNA:   3'- aagGCaGGGCua--UCGGCGCGaaUCCG- -5'
23979 5' -57 NC_005262.1 + 58917 0.67 0.573939
Target:  5'- -gCCGgcggCCCGAccgaUGGCgCGCGCUUcucggucGGCg -3'
miRNA:   3'- aaGGCa---GGGCU----AUCG-GCGCGAAu------CCG- -5'
23979 5' -57 NC_005262.1 + 30867 0.67 0.563236
Target:  5'- gUCgGcUCCU--UAGCCGCGCgaggcgaggUAGGCa -3'
miRNA:   3'- aAGgC-AGGGcuAUCGGCGCGa--------AUCCG- -5'
23979 5' -57 NC_005262.1 + 11159 0.67 0.563236
Target:  5'- -gCCG-CCCuuUGGCCGCucggGCUcAGGCg -3'
miRNA:   3'- aaGGCaGGGcuAUCGGCG----CGAaUCCG- -5'
23979 5' -57 NC_005262.1 + 49992 0.68 0.541998
Target:  5'- -cCCGcUCCCGccgaugaAGCCGCGCc--GGCg -3'
miRNA:   3'- aaGGC-AGGGCua-----UCGGCGCGaauCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.