Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23980 | 3' | -63.5 | NC_005262.1 | + | 38237 | 0.67 | 0.328165 |
Target: 5'- aCGGCuGCCGu-CUGGUUGGGAgcGCGGAa -3' miRNA: 3'- -GCCG-CGGCccGGCCAGCCUUa-CGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 45994 | 0.67 | 0.332647 |
Target: 5'- uCGGCGCgCGcauCCGGUCGGAugccuucugcccGCGGAu -3' miRNA: 3'- -GCCGCG-GCcc-GGCCAGCCUua----------CGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 13048 | 0.67 | 0.33566 |
Target: 5'- uCGaCGCCGaGCCGGUCGGcGAUGCc-- -3' miRNA: 3'- -GCcGCGGCcCGGCCAGCC-UUACGccu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 16493 | 0.67 | 0.34328 |
Target: 5'- gCGGCGCagaaucccgGcGGCCGGcCGGg--GCGGGu -3' miRNA: 3'- -GCCGCGg--------C-CCGGCCaGCCuuaCGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 46604 | 0.67 | 0.34328 |
Target: 5'- gGGCugcuGCgCGGGCaggggcgucgCGGUCGGAGUGCu-- -3' miRNA: 3'- gCCG----CG-GCCCG----------GCCAGCCUUACGccu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 28815 | 0.67 | 0.34328 |
Target: 5'- aCGGCGuCCGGGCgcgCGGccUCGcg--GCGGAa -3' miRNA: 3'- -GCCGC-GGCCCG---GCC--AGCcuuaCGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 50019 | 0.66 | 0.351023 |
Target: 5'- -cGCcauCCGGGCCGGUCGucagGCGGu -3' miRNA: 3'- gcCGc--GGCCCGGCCAGCcuuaCGCCu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 14149 | 0.66 | 0.358097 |
Target: 5'- gCGuGCGCCGGgauuguccgccgcGCCGa--GGAGUGCGGc -3' miRNA: 3'- -GC-CGCGGCC-------------CGGCcagCCUUACGCCu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 52034 | 0.66 | 0.358889 |
Target: 5'- aCGGCaugacgaucGCCGGcGCCuacaucgaGUcCGGggUGCGGGa -3' miRNA: 3'- -GCCG---------CGGCC-CGGc-------CA-GCCuuACGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 5180 | 0.66 | 0.391569 |
Target: 5'- cCGGCGUcgCGGGCgCGGgcgCGGccgGCGcGAc -3' miRNA: 3'- -GCCGCG--GCCCG-GCCa--GCCuuaCGC-CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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