Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23980 | 3' | -63.5 | NC_005262.1 | + | 48164 | 0.7 | 0.209005 |
Target: 5'- uCGGCGCCGGGCgGcucGUCGcGGcagGUGCGa- -3' miRNA: 3'- -GCCGCGGCCCGgC---CAGC-CU---UACGCcu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 48429 | 0.69 | 0.2362 |
Target: 5'- -aGCGCCGGGUCGGUCG---UGCcGAg -3' miRNA: 3'- gcCGCGGCCCGGCCAGCcuuACGcCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 49836 | 0.67 | 0.313548 |
Target: 5'- gGGCGCgGGcGCCGccggcGUCGG--UGCGGc -3' miRNA: 3'- gCCGCGgCC-CGGC-----CAGCCuuACGCCu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 50019 | 0.66 | 0.351023 |
Target: 5'- -cGCcauCCGGGCCGGUCGucagGCGGu -3' miRNA: 3'- gcCGc--GGCCCGGCCAGCcuuaCGCCu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 50087 | 0.7 | 0.214219 |
Target: 5'- gGGCGCCGGcGCggcuucauCGG-CGGGA-GCGGGc -3' miRNA: 3'- gCCGCGGCC-CG--------GCCaGCCUUaCGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 50172 | 0.69 | 0.253903 |
Target: 5'- gCGGCGCgGGuuCGGUCGGcgcaGCGGc -3' miRNA: 3'- -GCCGCGgCCcgGCCAGCCuua-CGCCu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 51466 | 0.67 | 0.320794 |
Target: 5'- aGGCGCgGccuuGGCCGGcgucgCGGAcgGCGcGGu -3' miRNA: 3'- gCCGCGgC----CCGGCCa----GCCUuaCGC-CU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 52034 | 0.66 | 0.358889 |
Target: 5'- aCGGCaugacgaucGCCGGcGCCuacaucgaGUcCGGggUGCGGGa -3' miRNA: 3'- -GCCG---------CGGCC-CGGc-------CA-GCCuuACGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 52335 | 0.68 | 0.292558 |
Target: 5'- aGGCGCCGGacgcguaucGCCGGau-GAagGCGGAc -3' miRNA: 3'- gCCGCGGCC---------CGGCCagcCUuaCGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 59894 | 0.68 | 0.272681 |
Target: 5'- uGGCGCCugcGGGCCGGUgcccucgaGGAAcGCGu- -3' miRNA: 3'- gCCGCGG---CCCGGCCAg-------CCUUaCGCcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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