Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23980 | 3' | -63.5 | NC_005262.1 | + | 59894 | 0.68 | 0.272681 |
Target: 5'- uGGCGCCugcGGGCCGGUgcccucgaGGAAcGCGu- -3' miRNA: 3'- gCCGCGG---CCCGGCCAg-------CCUUaCGCcu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 52335 | 0.68 | 0.292558 |
Target: 5'- aGGCGCCGGacgcguaucGCCGGau-GAagGCGGAc -3' miRNA: 3'- gCCGCGGCC---------CGGCCagcCUuaCGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 52034 | 0.66 | 0.358889 |
Target: 5'- aCGGCaugacgaucGCCGGcGCCuacaucgaGUcCGGggUGCGGGa -3' miRNA: 3'- -GCCG---------CGGCC-CGGc-------CA-GCCuuACGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 51466 | 0.67 | 0.320794 |
Target: 5'- aGGCGCgGccuuGGCCGGcgucgCGGAcgGCGcGGu -3' miRNA: 3'- gCCGCGgC----CCGGCCa----GCCUuaCGC-CU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 50172 | 0.69 | 0.253903 |
Target: 5'- gCGGCGCgGGuuCGGUCGGcgcaGCGGc -3' miRNA: 3'- -GCCGCGgCCcgGCCAGCCuua-CGCCu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 50087 | 0.7 | 0.214219 |
Target: 5'- gGGCGCCGGcGCggcuucauCGG-CGGGA-GCGGGc -3' miRNA: 3'- gCCGCGGCC-CG--------GCCaGCCUUaCGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 50019 | 0.66 | 0.351023 |
Target: 5'- -cGCcauCCGGGCCGGUCGucagGCGGu -3' miRNA: 3'- gcCGc--GGCCCGGCCAGCcuuaCGCCu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 49836 | 0.67 | 0.313548 |
Target: 5'- gGGCGCgGGcGCCGccggcGUCGG--UGCGGc -3' miRNA: 3'- gCCGCGgCC-CGGC-----CAGCCuuACGCCu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 48429 | 0.69 | 0.2362 |
Target: 5'- -aGCGCCGGGUCGGUCG---UGCcGAg -3' miRNA: 3'- gcCGCGGCCCGGCCAGCcuuACGcCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 48164 | 0.7 | 0.209005 |
Target: 5'- uCGGCGCCGGGCgGcucGUCGcGGcagGUGCGa- -3' miRNA: 3'- -GCCGCGGCCCGgC---CAGC-CU---UACGCcu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 46604 | 0.67 | 0.34328 |
Target: 5'- gGGCugcuGCgCGGGCaggggcgucgCGGUCGGAGUGCu-- -3' miRNA: 3'- gCCG----CG-GCCCG----------GCCAGCCUUACGccu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 46515 | 0.7 | 0.198905 |
Target: 5'- gCGGCGCggCGGGCCccugCGGAccuUGCGGGc -3' miRNA: 3'- -GCCGCG--GCCCGGcca-GCCUu--ACGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 45994 | 0.67 | 0.332647 |
Target: 5'- uCGGCGCgCGcauCCGGUCGGAugccuucugcccGCGGAu -3' miRNA: 3'- -GCCGCG-GCcc-GGCCAGCCUua----------CGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 43141 | 0.68 | 0.292558 |
Target: 5'- gCGGCGCgCGGuGCCGGcCGGGucgAUGUa-- -3' miRNA: 3'- -GCCGCG-GCC-CGGCCaGCCU---UACGccu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 42150 | 0.74 | 0.098578 |
Target: 5'- gCGGCGCCGGGcCCGGUCGcGGccgaucgucuguacGUGaUGGGc -3' miRNA: 3'- -GCCGCGGCCC-GGCCAGC-CU--------------UAC-GCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 40465 | 0.68 | 0.292558 |
Target: 5'- cCGGCcgugcauggGCCGGGCUGGUaucug-GCGGAc -3' miRNA: 3'- -GCCG---------CGGCCCGGCCAgccuuaCGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 39857 | 0.67 | 0.306427 |
Target: 5'- -cGCGUCGGGauGGUCGGcugGCGGc -3' miRNA: 3'- gcCGCGGCCCggCCAGCCuuaCGCCu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 38237 | 0.67 | 0.328165 |
Target: 5'- aCGGCuGCCGu-CUGGUUGGGAgcGCGGAa -3' miRNA: 3'- -GCCG-CGGCccGGCCAGCCUUa-CGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 29141 | 0.68 | 0.292558 |
Target: 5'- gGGuUGCCGcGGCUGuUCGuGAUGCGGAa -3' miRNA: 3'- gCC-GCGGC-CCGGCcAGCcUUACGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 28815 | 0.67 | 0.34328 |
Target: 5'- aCGGCGuCCGGGCgcgCGGccUCGcg--GCGGAa -3' miRNA: 3'- -GCCGC-GGCCCG---GCC--AGCcuuaCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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