Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23980 | 3' | -63.5 | NC_005262.1 | + | 49836 | 0.67 | 0.313548 |
Target: 5'- gGGCGCgGGcGCCGccggcGUCGG--UGCGGc -3' miRNA: 3'- gCCGCGgCC-CGGC-----CAGCCuuACGCCu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 50019 | 0.66 | 0.351023 |
Target: 5'- -cGCcauCCGGGCCGGUCGucagGCGGu -3' miRNA: 3'- gcCGc--GGCCCGGCCAGCcuuaCGCCu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 46604 | 0.67 | 0.34328 |
Target: 5'- gGGCugcuGCgCGGGCaggggcgucgCGGUCGGAGUGCu-- -3' miRNA: 3'- gCCG----CG-GCCCG----------GCCAGCCUUACGccu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 16493 | 0.67 | 0.34328 |
Target: 5'- gCGGCGCagaaucccgGcGGCCGGcCGGg--GCGGGu -3' miRNA: 3'- -GCCGCGg--------C-CCGGCCaGCCuuaCGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 28815 | 0.67 | 0.34328 |
Target: 5'- aCGGCGuCCGGGCgcgCGGccUCGcg--GCGGAa -3' miRNA: 3'- -GCCGC-GGCCCG---GCC--AGCcuuaCGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 13048 | 0.67 | 0.33566 |
Target: 5'- uCGaCGCCGaGCCGGUCGGcGAUGCc-- -3' miRNA: 3'- -GCcGCGGCcCGGCCAGCC-UUACGccu -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 45994 | 0.67 | 0.332647 |
Target: 5'- uCGGCGCgCGcauCCGGUCGGAugccuucugcccGCGGAu -3' miRNA: 3'- -GCCGCG-GCcc-GGCCAGCCUua----------CGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 51466 | 0.67 | 0.320794 |
Target: 5'- aGGCGCgGccuuGGCCGGcgucgCGGAcgGCGcGGu -3' miRNA: 3'- gCCGCGgC----CCGGCCa----GCCUuaCGC-CU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 25336 | 0.67 | 0.313548 |
Target: 5'- gCGGCGCaGGaGCCGGcguugcgcgCGGuucggGCGGAa -3' miRNA: 3'- -GCCGCGgCC-CGGCCa--------GCCuua--CGCCU- -5' |
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23980 | 3' | -63.5 | NC_005262.1 | + | 46515 | 0.7 | 0.198905 |
Target: 5'- gCGGCGCggCGGGCCccugCGGAccuUGCGGGc -3' miRNA: 3'- -GCCGCG--GCCCGGcca-GCCUu--ACGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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