miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23980 5' -57.6 NC_005262.1 + 43845 0.66 0.623406
Target:  5'- --cCGCGCGcGGCGGugcgccggcaggaccUCGGCGCGa-- -3'
miRNA:   3'- gaaGUGCGUaCCGCC---------------AGCCGCGUcua -5'
23980 5' -57.6 NC_005262.1 + 46699 0.66 0.620152
Target:  5'- -aUCGCGUcgGGCGGgaucuguggcgucugCGGCGaGGAc -3'
miRNA:   3'- gaAGUGCGuaCCGCCa--------------GCCGCgUCUa -5'
23980 5' -57.6 NC_005262.1 + 29763 0.66 0.619068
Target:  5'- aUUCGCGgGUugGGCGGgcugcgCGGgCGCGGGc -3'
miRNA:   3'- gAAGUGCgUA--CCGCCa-----GCC-GCGUCUa -5'
23980 5' -57.6 NC_005262.1 + 43610 0.66 0.619068
Target:  5'- -aUCGCGCA-GGUgacgcucgccGGcacCGGCGCAGAa -3'
miRNA:   3'- gaAGUGCGUaCCG----------CCa--GCCGCGUCUa -5'
23980 5' -57.6 NC_005262.1 + 17548 0.66 0.608232
Target:  5'- -gUCGCGCGcgaGGCGGcagccgcggCGGCGCGcGAa -3'
miRNA:   3'- gaAGUGCGUa--CCGCCa--------GCCGCGU-CUa -5'
23980 5' -57.6 NC_005262.1 + 57767 0.66 0.58663
Target:  5'- --gCGCGCaAUGGCgugcuGGUUGGCgaGCAGAg -3'
miRNA:   3'- gaaGUGCG-UACCG-----CCAGCCG--CGUCUa -5'
23980 5' -57.6 NC_005262.1 + 53429 0.66 0.57588
Target:  5'- gUUCGCGCGgucGGCGaGguagCGGCGCGc-- -3'
miRNA:   3'- gAAGUGCGUa--CCGC-Ca---GCCGCGUcua -5'
23980 5' -57.6 NC_005262.1 + 35943 0.66 0.573735
Target:  5'- -gUCGCGCGcacaaacaucugGGCGGUCgcGGCGCcGAc -3'
miRNA:   3'- gaAGUGCGUa-----------CCGCCAG--CCGCGuCUa -5'
23980 5' -57.6 NC_005262.1 + 62739 0.67 0.543931
Target:  5'- --gCGCGC-UGGCGGUCaGCGCc--- -3'
miRNA:   3'- gaaGUGCGuACCGCCAGcCGCGucua -5'
23980 5' -57.6 NC_005262.1 + 22781 0.67 0.543931
Target:  5'- --cCAUGCGaGGCGGUCgaGGCGCGu-- -3'
miRNA:   3'- gaaGUGCGUaCCGCCAG--CCGCGUcua -5'
23980 5' -57.6 NC_005262.1 + 2904 0.67 0.533405
Target:  5'- -aUCAgGC-UGGUgagguucaucuGGUCGGCGCAGu- -3'
miRNA:   3'- gaAGUgCGuACCG-----------CCAGCCGCGUCua -5'
23980 5' -57.6 NC_005262.1 + 6173 0.67 0.522954
Target:  5'- -gUCACGCGcuccUGcgccucGCGGUCauaGGCGCGGAa -3'
miRNA:   3'- gaAGUGCGU----AC------CGCCAG---CCGCGUCUa -5'
23980 5' -57.6 NC_005262.1 + 50241 0.68 0.502295
Target:  5'- ---aGCGCA-GGCGGUCG-CGCAGc- -3'
miRNA:   3'- gaagUGCGUaCCGCCAGCcGCGUCua -5'
23980 5' -57.6 NC_005262.1 + 22361 0.68 0.482001
Target:  5'- -aUC-CGCGUGGUgcggagGGUgucCGGCGCGGAUc -3'
miRNA:   3'- gaAGuGCGUACCG------CCA---GCCGCGUCUA- -5'
23980 5' -57.6 NC_005262.1 + 17002 0.68 0.472004
Target:  5'- cCUUCAUGUGguGCGGUgCGGUGCGGGc -3'
miRNA:   3'- -GAAGUGCGUacCGCCA-GCCGCGUCUa -5'
23980 5' -57.6 NC_005262.1 + 9141 0.68 0.472004
Target:  5'- ---gGCGCcgGGcCGGUCGGaauGCGGAUc -3'
miRNA:   3'- gaagUGCGuaCC-GCCAGCCg--CGUCUA- -5'
23980 5' -57.6 NC_005262.1 + 5808 0.68 0.472004
Target:  5'- --gCACGCGuucaugagggacUGGCGGUUuGCGUAGAg -3'
miRNA:   3'- gaaGUGCGU------------ACCGCCAGcCGCGUCUa -5'
23980 5' -57.6 NC_005262.1 + 49898 0.68 0.462112
Target:  5'- -aUCGCGCGgccgaucgGGcCGGaCGGUGCAGGg -3'
miRNA:   3'- gaAGUGCGUa-------CC-GCCaGCCGCGUCUa -5'
23980 5' -57.6 NC_005262.1 + 51553 0.68 0.452331
Target:  5'- -cUCGCGUAccacGUGGUCGcGCGCGGAg -3'
miRNA:   3'- gaAGUGCGUac--CGCCAGC-CGCGUCUa -5'
23980 5' -57.6 NC_005262.1 + 23432 0.69 0.442664
Target:  5'- gCUUCACGCcgGccGUGGUCGaGCGCGu-- -3'
miRNA:   3'- -GAAGUGCGuaC--CGCCAGC-CGCGUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.