Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23980 | 5' | -57.6 | NC_005262.1 | + | 9176 | 1.05 | 0.001194 |
Target: 5'- cCUUCACGCAUGGCGGUCGGCGCAGAUc -3' miRNA: 3'- -GAAGUGCGUACCGCCAGCCGCGUCUA- -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 55018 | 0.8 | 0.077844 |
Target: 5'- -cUCGCGCAc-GCGGUCGGCGCGGGc -3' miRNA: 3'- gaAGUGCGUacCGCCAGCCGCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 50178 | 0.76 | 0.147597 |
Target: 5'- gUUCGCGCGgcgcgGGUucGGUCGGCGCAGc- -3' miRNA: 3'- gAAGUGCGUa----CCG--CCAGCCGCGUCua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 15136 | 0.74 | 0.219498 |
Target: 5'- --gCACGCAUcgcggccGGCGucgaGUCGGCGCGGAUg -3' miRNA: 3'- gaaGUGCGUA-------CCGC----CAGCCGCGUCUA- -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 61861 | 0.72 | 0.269983 |
Target: 5'- --aCGCGC-UGGuCGGUCGGCGCGu-- -3' miRNA: 3'- gaaGUGCGuACC-GCCAGCCGCGUcua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 5299 | 0.71 | 0.313124 |
Target: 5'- -aUCACGCGgucgaGGCGGUCGGagcuggccgGCAGGa -3' miRNA: 3'- gaAGUGCGUa----CCGCCAGCCg--------CGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 1904 | 0.71 | 0.328622 |
Target: 5'- cCUUCGaGCggGGCGGagGGUGCGGGUu -3' miRNA: 3'- -GAAGUgCGuaCCGCCagCCGCGUCUA- -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 7810 | 0.71 | 0.320803 |
Target: 5'- -cUCACGC-UGaGCGGUCaGCGCAaGAUg -3' miRNA: 3'- gaAGUGCGuAC-CGCCAGcCGCGU-CUA- -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 11509 | 0.71 | 0.344679 |
Target: 5'- -gUCGCGCAccuucGGCGGccCGGCGCGGc- -3' miRNA: 3'- gaAGUGCGUa----CCGCCa-GCCGCGUCua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 19608 | 0.71 | 0.328622 |
Target: 5'- cCUUCgguGCGaGUGGCGGUCGGCGUc--- -3' miRNA: 3'- -GAAG---UGCgUACCGCCAGCCGCGucua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 23432 | 0.69 | 0.442664 |
Target: 5'- gCUUCACGCcgGccGUGGUCGaGCGCGu-- -3' miRNA: 3'- -GAAGUGCGuaC--CGCCAGC-CGCGUcua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 20705 | 0.69 | 0.414382 |
Target: 5'- uUUCACGUGUGGCGGaUUGGCuacGCAa-- -3' miRNA: 3'- gAAGUGCGUACCGCC-AGCCG---CGUcua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 24963 | 0.69 | 0.436921 |
Target: 5'- cCUUCACGCGccGGCGGaugCacaucgccgagcacuGGCGCAGGg -3' miRNA: 3'- -GAAGUGCGUa-CCGCCa--G---------------CCGCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 40591 | 0.69 | 0.396156 |
Target: 5'- -gUCGCGC-UGaCGGU-GGCGCAGAUg -3' miRNA: 3'- gaAGUGCGuACcGCCAgCCGCGUCUA- -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 36517 | 0.69 | 0.396156 |
Target: 5'- uCUUUACGU-UGaCGGUCGGCGCGGc- -3' miRNA: 3'- -GAAGUGCGuACcGCCAGCCGCGUCua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 22361 | 0.68 | 0.482001 |
Target: 5'- -aUC-CGCGUGGUgcggagGGUgucCGGCGCGGAUc -3' miRNA: 3'- gaAGuGCGUACCG------CCA---GCCGCGUCUA- -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 51553 | 0.68 | 0.452331 |
Target: 5'- -cUCGCGUAccacGUGGUCGcGCGCGGAg -3' miRNA: 3'- gaAGUGCGUac--CGCCAGC-CGCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 50241 | 0.68 | 0.502295 |
Target: 5'- ---aGCGCA-GGCGGUCG-CGCAGc- -3' miRNA: 3'- gaagUGCGUaCCGCCAGCcGCGUCua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 17002 | 0.68 | 0.472004 |
Target: 5'- cCUUCAUGUGguGCGGUgCGGUGCGGGc -3' miRNA: 3'- -GAAGUGCGUacCGCCA-GCCGCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 49898 | 0.68 | 0.462112 |
Target: 5'- -aUCGCGCGgccgaucgGGcCGGaCGGUGCAGGg -3' miRNA: 3'- gaAGUGCGUa-------CC-GCCaGCCGCGUCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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