Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23980 | 5' | -57.6 | NC_005262.1 | + | 22361 | 0.68 | 0.482001 |
Target: 5'- -aUC-CGCGUGGUgcggagGGUgucCGGCGCGGAUc -3' miRNA: 3'- gaAGuGCGUACCG------CCA---GCCGCGUCUA- -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 50241 | 0.68 | 0.502295 |
Target: 5'- ---aGCGCA-GGCGGUCG-CGCAGc- -3' miRNA: 3'- gaagUGCGUaCCGCCAGCcGCGUCua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 6173 | 0.67 | 0.522954 |
Target: 5'- -gUCACGCGcuccUGcgccucGCGGUCauaGGCGCGGAa -3' miRNA: 3'- gaAGUGCGU----AC------CGCCAG---CCGCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 2904 | 0.67 | 0.533405 |
Target: 5'- -aUCAgGC-UGGUgagguucaucuGGUCGGCGCAGu- -3' miRNA: 3'- gaAGUgCGuACCG-----------CCAGCCGCGUCua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 22781 | 0.67 | 0.543931 |
Target: 5'- --cCAUGCGaGGCGGUCgaGGCGCGu-- -3' miRNA: 3'- gaaGUGCGUaCCGCCAG--CCGCGUcua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 62739 | 0.67 | 0.543931 |
Target: 5'- --gCGCGC-UGGCGGUCaGCGCc--- -3' miRNA: 3'- gaaGUGCGuACCGCCAGcCGCGucua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 35943 | 0.66 | 0.573735 |
Target: 5'- -gUCGCGCGcacaaacaucugGGCGGUCgcGGCGCcGAc -3' miRNA: 3'- gaAGUGCGUa-----------CCGCCAG--CCGCGuCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 53429 | 0.66 | 0.57588 |
Target: 5'- gUUCGCGCGgucGGCGaGguagCGGCGCGc-- -3' miRNA: 3'- gAAGUGCGUa--CCGC-Ca---GCCGCGUcua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 57767 | 0.66 | 0.58663 |
Target: 5'- --gCGCGCaAUGGCgugcuGGUUGGCgaGCAGAg -3' miRNA: 3'- gaaGUGCG-UACCG-----CCAGCCG--CGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 17548 | 0.66 | 0.608232 |
Target: 5'- -gUCGCGCGcgaGGCGGcagccgcggCGGCGCGcGAa -3' miRNA: 3'- gaAGUGCGUa--CCGCCa--------GCCGCGU-CUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 29763 | 0.66 | 0.619068 |
Target: 5'- aUUCGCGgGUugGGCGGgcugcgCGGgCGCGGGc -3' miRNA: 3'- gAAGUGCgUA--CCGCCa-----GCC-GCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 43610 | 0.66 | 0.619068 |
Target: 5'- -aUCGCGCA-GGUgacgcucgccGGcacCGGCGCAGAa -3' miRNA: 3'- gaAGUGCGUaCCG----------CCa--GCCGCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 46699 | 0.66 | 0.620152 |
Target: 5'- -aUCGCGUcgGGCGGgaucuguggcgucugCGGCGaGGAc -3' miRNA: 3'- gaAGUGCGuaCCGCCa--------------GCCGCgUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 43845 | 0.66 | 0.623406 |
Target: 5'- --cCGCGCGcGGCGGugcgccggcaggaccUCGGCGCGa-- -3' miRNA: 3'- gaaGUGCGUaCCGCC---------------AGCCGCGUcua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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