miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23980 5' -57.6 NC_005262.1 + 24963 0.69 0.436921
Target:  5'- cCUUCACGCGccGGCGGaugCacaucgccgagcacuGGCGCAGGg -3'
miRNA:   3'- -GAAGUGCGUa-CCGCCa--G---------------CCGCGUCUa -5'
23980 5' -57.6 NC_005262.1 + 20705 0.69 0.414382
Target:  5'- uUUCACGUGUGGCGGaUUGGCuacGCAa-- -3'
miRNA:   3'- gAAGUGCGUACCGCC-AGCCG---CGUcua -5'
23980 5' -57.6 NC_005262.1 + 40591 0.69 0.396156
Target:  5'- -gUCGCGC-UGaCGGU-GGCGCAGAUg -3'
miRNA:   3'- gaAGUGCGuACcGCCAgCCGCGUCUA- -5'
23980 5' -57.6 NC_005262.1 + 36517 0.69 0.396156
Target:  5'- uCUUUACGU-UGaCGGUCGGCGCGGc- -3'
miRNA:   3'- -GAAGUGCGuACcGCCAGCCGCGUCua -5'
23980 5' -57.6 NC_005262.1 + 11509 0.71 0.344679
Target:  5'- -gUCGCGCAccuucGGCGGccCGGCGCGGc- -3'
miRNA:   3'- gaAGUGCGUa----CCGCCa-GCCGCGUCua -5'
23980 5' -57.6 NC_005262.1 + 1904 0.71 0.328622
Target:  5'- cCUUCGaGCggGGCGGagGGUGCGGGUu -3'
miRNA:   3'- -GAAGUgCGuaCCGCCagCCGCGUCUA- -5'
23980 5' -57.6 NC_005262.1 + 19608 0.71 0.328622
Target:  5'- cCUUCgguGCGaGUGGCGGUCGGCGUc--- -3'
miRNA:   3'- -GAAG---UGCgUACCGCCAGCCGCGucua -5'
23980 5' -57.6 NC_005262.1 + 7810 0.71 0.320803
Target:  5'- -cUCACGC-UGaGCGGUCaGCGCAaGAUg -3'
miRNA:   3'- gaAGUGCGuAC-CGCCAGcCGCGU-CUA- -5'
23980 5' -57.6 NC_005262.1 + 5299 0.71 0.313124
Target:  5'- -aUCACGCGgucgaGGCGGUCGGagcuggccgGCAGGa -3'
miRNA:   3'- gaAGUGCGUa----CCGCCAGCCg--------CGUCUa -5'
23980 5' -57.6 NC_005262.1 + 61861 0.72 0.269983
Target:  5'- --aCGCGC-UGGuCGGUCGGCGCGu-- -3'
miRNA:   3'- gaaGUGCGuACC-GCCAGCCGCGUcua -5'
23980 5' -57.6 NC_005262.1 + 15136 0.74 0.219498
Target:  5'- --gCACGCAUcgcggccGGCGucgaGUCGGCGCGGAUg -3'
miRNA:   3'- gaaGUGCGUA-------CCGC----CAGCCGCGUCUA- -5'
23980 5' -57.6 NC_005262.1 + 50178 0.76 0.147597
Target:  5'- gUUCGCGCGgcgcgGGUucGGUCGGCGCAGc- -3'
miRNA:   3'- gAAGUGCGUa----CCG--CCAGCCGCGUCua -5'
23980 5' -57.6 NC_005262.1 + 55018 0.8 0.077844
Target:  5'- -cUCGCGCAc-GCGGUCGGCGCGGGc -3'
miRNA:   3'- gaAGUGCGUacCGCCAGCCGCGUCUa -5'
23980 5' -57.6 NC_005262.1 + 9176 1.05 0.001194
Target:  5'- cCUUCACGCAUGGCGGUCGGCGCAGAUc -3'
miRNA:   3'- -GAAGUGCGUACCGCCAGCCGCGUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.