miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23980 5' -57.6 NC_005262.1 + 36517 0.69 0.396156
Target:  5'- uCUUUACGU-UGaCGGUCGGCGCGGc- -3'
miRNA:   3'- -GAAGUGCGuACcGCCAGCCGCGUCua -5'
23980 5' -57.6 NC_005262.1 + 40591 0.69 0.396156
Target:  5'- -gUCGCGC-UGaCGGU-GGCGCAGAUg -3'
miRNA:   3'- gaAGUGCGuACcGCCAgCCGCGUCUA- -5'
23980 5' -57.6 NC_005262.1 + 43610 0.66 0.619068
Target:  5'- -aUCGCGCA-GGUgacgcucgccGGcacCGGCGCAGAa -3'
miRNA:   3'- gaAGUGCGUaCCG----------CCa--GCCGCGUCUa -5'
23980 5' -57.6 NC_005262.1 + 43845 0.66 0.623406
Target:  5'- --cCGCGCGcGGCGGugcgccggcaggaccUCGGCGCGa-- -3'
miRNA:   3'- gaaGUGCGUaCCGCC---------------AGCCGCGUcua -5'
23980 5' -57.6 NC_005262.1 + 46699 0.66 0.620152
Target:  5'- -aUCGCGUcgGGCGGgaucuguggcgucugCGGCGaGGAc -3'
miRNA:   3'- gaAGUGCGuaCCGCCa--------------GCCGCgUCUa -5'
23980 5' -57.6 NC_005262.1 + 49898 0.68 0.462112
Target:  5'- -aUCGCGCGgccgaucgGGcCGGaCGGUGCAGGg -3'
miRNA:   3'- gaAGUGCGUa-------CC-GCCaGCCGCGUCUa -5'
23980 5' -57.6 NC_005262.1 + 50178 0.76 0.147597
Target:  5'- gUUCGCGCGgcgcgGGUucGGUCGGCGCAGc- -3'
miRNA:   3'- gAAGUGCGUa----CCG--CCAGCCGCGUCua -5'
23980 5' -57.6 NC_005262.1 + 50241 0.68 0.502295
Target:  5'- ---aGCGCA-GGCGGUCG-CGCAGc- -3'
miRNA:   3'- gaagUGCGUaCCGCCAGCcGCGUCua -5'
23980 5' -57.6 NC_005262.1 + 51553 0.68 0.452331
Target:  5'- -cUCGCGUAccacGUGGUCGcGCGCGGAg -3'
miRNA:   3'- gaAGUGCGUac--CGCCAGC-CGCGUCUa -5'
23980 5' -57.6 NC_005262.1 + 53429 0.66 0.57588
Target:  5'- gUUCGCGCGgucGGCGaGguagCGGCGCGc-- -3'
miRNA:   3'- gAAGUGCGUa--CCGC-Ca---GCCGCGUcua -5'
23980 5' -57.6 NC_005262.1 + 55018 0.8 0.077844
Target:  5'- -cUCGCGCAc-GCGGUCGGCGCGGGc -3'
miRNA:   3'- gaAGUGCGUacCGCCAGCCGCGUCUa -5'
23980 5' -57.6 NC_005262.1 + 57767 0.66 0.58663
Target:  5'- --gCGCGCaAUGGCgugcuGGUUGGCgaGCAGAg -3'
miRNA:   3'- gaaGUGCG-UACCG-----CCAGCCG--CGUCUa -5'
23980 5' -57.6 NC_005262.1 + 61861 0.72 0.269983
Target:  5'- --aCGCGC-UGGuCGGUCGGCGCGu-- -3'
miRNA:   3'- gaaGUGCGuACC-GCCAGCCGCGUcua -5'
23980 5' -57.6 NC_005262.1 + 62739 0.67 0.543931
Target:  5'- --gCGCGC-UGGCGGUCaGCGCc--- -3'
miRNA:   3'- gaaGUGCGuACCGCCAGcCGCGucua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.