Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23980 | 5' | -57.6 | NC_005262.1 | + | 9176 | 1.05 | 0.001194 |
Target: 5'- cCUUCACGCAUGGCGGUCGGCGCAGAUc -3' miRNA: 3'- -GAAGUGCGUACCGCCAGCCGCGUCUA- -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 22361 | 0.68 | 0.482001 |
Target: 5'- -aUC-CGCGUGGUgcggagGGUgucCGGCGCGGAUc -3' miRNA: 3'- gaAGuGCGUACCG------CCA---GCCGCGUCUA- -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 6173 | 0.67 | 0.522954 |
Target: 5'- -gUCACGCGcuccUGcgccucGCGGUCauaGGCGCGGAa -3' miRNA: 3'- gaAGUGCGU----AC------CGCCAG---CCGCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 2904 | 0.67 | 0.533405 |
Target: 5'- -aUCAgGC-UGGUgagguucaucuGGUCGGCGCAGu- -3' miRNA: 3'- gaAGUgCGuACCG-----------CCAGCCGCGUCua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 62739 | 0.67 | 0.543931 |
Target: 5'- --gCGCGC-UGGCGGUCaGCGCc--- -3' miRNA: 3'- gaaGUGCGuACCGCCAGcCGCGucua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 57767 | 0.66 | 0.58663 |
Target: 5'- --gCGCGCaAUGGCgugcuGGUUGGCgaGCAGAg -3' miRNA: 3'- gaaGUGCG-UACCG-----CCAGCCG--CGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 17548 | 0.66 | 0.608232 |
Target: 5'- -gUCGCGCGcgaGGCGGcagccgcggCGGCGCGcGAa -3' miRNA: 3'- gaAGUGCGUa--CCGCCa--------GCCGCGU-CUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 43610 | 0.66 | 0.619068 |
Target: 5'- -aUCGCGCA-GGUgacgcucgccGGcacCGGCGCAGAa -3' miRNA: 3'- gaAGUGCGUaCCG----------CCa--GCCGCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 43845 | 0.66 | 0.623406 |
Target: 5'- --cCGCGCGcGGCGGugcgccggcaggaccUCGGCGCGa-- -3' miRNA: 3'- gaaGUGCGUaCCGCC---------------AGCCGCGUcua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 9141 | 0.68 | 0.472004 |
Target: 5'- ---gGCGCcgGGcCGGUCGGaauGCGGAUc -3' miRNA: 3'- gaagUGCGuaCC-GCCAGCCg--CGUCUA- -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 5808 | 0.68 | 0.472004 |
Target: 5'- --gCACGCGuucaugagggacUGGCGGUUuGCGUAGAg -3' miRNA: 3'- gaaGUGCGU------------ACCGCCAGcCGCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 55018 | 0.8 | 0.077844 |
Target: 5'- -cUCGCGCAc-GCGGUCGGCGCGGGc -3' miRNA: 3'- gaAGUGCGUacCGCCAGCCGCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 15136 | 0.74 | 0.219498 |
Target: 5'- --gCACGCAUcgcggccGGCGucgaGUCGGCGCGGAUg -3' miRNA: 3'- gaaGUGCGUA-------CCGC----CAGCCGCGUCUA- -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 5299 | 0.71 | 0.313124 |
Target: 5'- -aUCACGCGgucgaGGCGGUCGGagcuggccgGCAGGa -3' miRNA: 3'- gaAGUGCGUa----CCGCCAGCCg--------CGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 1904 | 0.71 | 0.328622 |
Target: 5'- cCUUCGaGCggGGCGGagGGUGCGGGUu -3' miRNA: 3'- -GAAGUgCGuaCCGCCagCCGCGUCUA- -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 19608 | 0.71 | 0.328622 |
Target: 5'- cCUUCgguGCGaGUGGCGGUCGGCGUc--- -3' miRNA: 3'- -GAAG---UGCgUACCGCCAGCCGCGucua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 36517 | 0.69 | 0.396156 |
Target: 5'- uCUUUACGU-UGaCGGUCGGCGCGGc- -3' miRNA: 3'- -GAAGUGCGuACcGCCAGCCGCGUCua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 40591 | 0.69 | 0.396156 |
Target: 5'- -gUCGCGC-UGaCGGU-GGCGCAGAUg -3' miRNA: 3'- gaAGUGCGuACcGCCAgCCGCGUCUA- -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 51553 | 0.68 | 0.452331 |
Target: 5'- -cUCGCGUAccacGUGGUCGcGCGCGGAg -3' miRNA: 3'- gaAGUGCGUac--CGCCAGC-CGCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 50178 | 0.76 | 0.147597 |
Target: 5'- gUUCGCGCGgcgcgGGUucGGUCGGCGCAGc- -3' miRNA: 3'- gAAGUGCGUa----CCG--CCAGCCGCGUCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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