Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23980 | 5' | -57.6 | NC_005262.1 | + | 24963 | 0.69 | 0.436921 |
Target: 5'- cCUUCACGCGccGGCGGaugCacaucgccgagcacuGGCGCAGGg -3' miRNA: 3'- -GAAGUGCGUa-CCGCCa--G---------------CCGCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 20705 | 0.69 | 0.414382 |
Target: 5'- uUUCACGUGUGGCGGaUUGGCuacGCAa-- -3' miRNA: 3'- gAAGUGCGUACCGCC-AGCCG---CGUcua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 11509 | 0.71 | 0.344679 |
Target: 5'- -gUCGCGCAccuucGGCGGccCGGCGCGGc- -3' miRNA: 3'- gaAGUGCGUa----CCGCCa-GCCGCGUCua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 7810 | 0.71 | 0.320803 |
Target: 5'- -cUCACGC-UGaGCGGUCaGCGCAaGAUg -3' miRNA: 3'- gaAGUGCGuAC-CGCCAGcCGCGU-CUA- -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 61861 | 0.72 | 0.269983 |
Target: 5'- --aCGCGC-UGGuCGGUCGGCGCGu-- -3' miRNA: 3'- gaaGUGCGuACC-GCCAGCCGCGUcua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 49898 | 0.68 | 0.462112 |
Target: 5'- -aUCGCGCGgccgaucgGGcCGGaCGGUGCAGGg -3' miRNA: 3'- gaAGUGCGUa-------CC-GCCaGCCGCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 17002 | 0.68 | 0.472004 |
Target: 5'- cCUUCAUGUGguGCGGUgCGGUGCGGGc -3' miRNA: 3'- -GAAGUGCGUacCGCCA-GCCGCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 50241 | 0.68 | 0.502295 |
Target: 5'- ---aGCGCA-GGCGGUCG-CGCAGc- -3' miRNA: 3'- gaagUGCGUaCCGCCAGCcGCGUCua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 22781 | 0.67 | 0.543931 |
Target: 5'- --cCAUGCGaGGCGGUCgaGGCGCGu-- -3' miRNA: 3'- gaaGUGCGUaCCGCCAG--CCGCGUcua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 35943 | 0.66 | 0.573735 |
Target: 5'- -gUCGCGCGcacaaacaucugGGCGGUCgcGGCGCcGAc -3' miRNA: 3'- gaAGUGCGUa-----------CCGCCAG--CCGCGuCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 53429 | 0.66 | 0.57588 |
Target: 5'- gUUCGCGCGgucGGCGaGguagCGGCGCGc-- -3' miRNA: 3'- gAAGUGCGUa--CCGC-Ca---GCCGCGUcua -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 29763 | 0.66 | 0.619068 |
Target: 5'- aUUCGCGgGUugGGCGGgcugcgCGGgCGCGGGc -3' miRNA: 3'- gAAGUGCgUA--CCGCCa-----GCC-GCGUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 46699 | 0.66 | 0.620152 |
Target: 5'- -aUCGCGUcgGGCGGgaucuguggcgucugCGGCGaGGAc -3' miRNA: 3'- gaAGUGCGuaCCGCCa--------------GCCGCgUCUa -5' |
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23980 | 5' | -57.6 | NC_005262.1 | + | 50178 | 0.76 | 0.147597 |
Target: 5'- gUUCGCGCGgcgcgGGUucGGUCGGCGCAGc- -3' miRNA: 3'- gAAGUGCGUa----CCG--CCAGCCGCGUCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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