Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23981 | 3' | -58 | NC_005262.1 | + | 37810 | 0.66 | 0.635757 |
Target: 5'- ----cGCGAAcguGCCCGCcgUGUacugcgcgaGCGGCa -3' miRNA: 3'- gcccaCGCUU---CGGGCGuaACA---------CGCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 23228 | 0.66 | 0.635757 |
Target: 5'- gCGGuaUGCGAAGCgCG----GUGCGGCg -3' miRNA: 3'- -GCCc-ACGCUUCGgGCguaaCACGCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 27180 | 0.66 | 0.614368 |
Target: 5'- -uGGUGUGguGCCgUGC--UGUGUGGCa -3' miRNA: 3'- gcCCACGCuuCGG-GCGuaACACGCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 33493 | 0.66 | 0.593038 |
Target: 5'- gCGGGaacGUGgcGCCUGCGaccUUGagcuggGCGGCg -3' miRNA: 3'- -GCCCa--CGCuuCGGGCGU---AACa-----CGCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 14664 | 0.66 | 0.582415 |
Target: 5'- uGGGUGCGguGCgCGUgagcgccGCGGCg -3' miRNA: 3'- gCCCACGCuuCGgGCGuaaca--CGCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 5044 | 0.67 | 0.57606 |
Target: 5'- gCGGauuaUGCGAauccuggucgaugagGGCCCGCAacacGUGCGGa -3' miRNA: 3'- -GCCc---ACGCU---------------UCGGGCGUaa--CACGCCg -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 26392 | 0.67 | 0.575002 |
Target: 5'- uCGGGcucuuguucgucgucUGCcccuGAcgcacguGGUCCGCGUcGUGCGGCa -3' miRNA: 3'- -GCCC---------------ACG----CU-------UCGGGCGUAaCACGCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 30892 | 0.67 | 0.571832 |
Target: 5'- cCGGGUuuGCGAuguaGGUCUGCAU-GU-CGGCu -3' miRNA: 3'- -GCCCA--CGCU----UCGGGCGUAaCAcGCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 25349 | 0.67 | 0.570776 |
Target: 5'- uGcGGUGCcagaggcggcgcaGGAGCCgGCGUUGcgcGCGGUu -3' miRNA: 3'- gC-CCACG-------------CUUCGGgCGUAACa--CGCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 10802 | 0.67 | 0.561295 |
Target: 5'- gCGGGaGCGccGgCCGCGUgcgcGCGGCc -3' miRNA: 3'- -GCCCaCGCuuCgGGCGUAaca-CGCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 27628 | 0.67 | 0.561295 |
Target: 5'- cCGGG-GCuGAGCUCGCccucgucgGUGCGcGCg -3' miRNA: 3'- -GCCCaCGcUUCGGGCGuaa-----CACGC-CG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 41937 | 0.67 | 0.530034 |
Target: 5'- aCGGGguucucggGCGAAauCCCGCGccUUGUGCcGCg -3' miRNA: 3'- -GCCCa-------CGCUUc-GGGCGU--AACACGcCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 20917 | 0.67 | 0.518729 |
Target: 5'- gCGGGUGCcgcGcCCCGCGaUGUucccugucgauucGCGGCu -3' miRNA: 3'- -GCCCACGcuuC-GGGCGUaACA-------------CGCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 23372 | 0.68 | 0.498426 |
Target: 5'- gCGGcG-GCGAAgGCCCGCAacGUgaagcgccacaagGCGGCg -3' miRNA: 3'- -GCC-CaCGCUU-CGGGCGUaaCA-------------CGCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 5059 | 0.68 | 0.489405 |
Target: 5'- uCGGcGgGC-AGGCCCGCGgcg-GCGGCg -3' miRNA: 3'- -GCC-CaCGcUUCGGGCGUaacaCGCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 41823 | 0.68 | 0.479473 |
Target: 5'- uGGGUcGUGAucCCCGUc--GUGCGGCu -3' miRNA: 3'- gCCCA-CGCUucGGGCGuaaCACGCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 63672 | 0.69 | 0.438896 |
Target: 5'- gCGGGggcgGCGGAGCCagacaCGCuaccgccgGCGGCg -3' miRNA: 3'- -GCCCa---CGCUUCGG-----GCGuaaca---CGCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 41589 | 0.69 | 0.43139 |
Target: 5'- uGGGUGU--GGCCCGgAUcgGUGaCGGUg -3' miRNA: 3'- gCCCACGcuUCGGGCgUAa-CAC-GCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 62433 | 0.69 | 0.43139 |
Target: 5'- -cGGUGU-AGGgCUGCAUgGUGCGGCa -3' miRNA: 3'- gcCCACGcUUCgGGCGUAaCACGCCG- -5' |
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23981 | 3' | -58 | NC_005262.1 | + | 33925 | 0.7 | 0.395025 |
Target: 5'- gGcGGUGCcGAGCUCGCGgcgGgcacGCGGCa -3' miRNA: 3'- gC-CCACGcUUCGGGCGUaa-Ca---CGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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