Results 1 - 20 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 24836 | 0.66 | 0.856598 |
Target: 5'- gGC-CGGcgccGUGCCGAUcaccCUGCGCCa -3' miRNA: 3'- -CGuGCCauacCACGGCUAa---GGCGUGG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 12845 | 0.66 | 0.856598 |
Target: 5'- uCGCGGgaaccGUcGUGCCGAgcUUCGCGCUg -3' miRNA: 3'- cGUGCCa----UAcCACGGCUa-AGGCGUGG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 16441 | 0.66 | 0.856598 |
Target: 5'- aCGCGGc--GGcGCCGAUcagCGCGCCg -3' miRNA: 3'- cGUGCCauaCCaCGGCUAag-GCGUGG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 51982 | 0.66 | 0.848223 |
Target: 5'- -aGCGGUc-GGUGCCG-UUCgGCGgCg -3' miRNA: 3'- cgUGCCAuaCCACGGCuAAGgCGUgG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 41626 | 0.66 | 0.839626 |
Target: 5'- -aACGGUgacgccguacaAUGGUGUCGGUcagguuguuUCCggcgGCGCCg -3' miRNA: 3'- cgUGCCA-----------UACCACGGCUA---------AGG----CGUGG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 36079 | 0.66 | 0.830814 |
Target: 5'- cGCGCGGcacGUGGaacGCaCGAUcCCGCgguGCCa -3' miRNA: 3'- -CGUGCCa--UACCa--CG-GCUAaGGCG---UGG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 35923 | 0.66 | 0.821797 |
Target: 5'- -gGCGGUcgcGGcGCCGAcgCCGCuCCg -3' miRNA: 3'- cgUGCCAua-CCaCGGCUaaGGCGuGG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 27259 | 0.66 | 0.821797 |
Target: 5'- aGCACGGcaccacaccAUGcG-GCCGGUgugCCGgCACCa -3' miRNA: 3'- -CGUGCCa--------UAC-CaCGGCUAa--GGC-GUGG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 46783 | 0.66 | 0.821797 |
Target: 5'- cGCGCGGUAUcaacggcGGcgaGCCGAUgaccgacgugcaggcCCGCGCg -3' miRNA: 3'- -CGUGCCAUA-------CCa--CGGCUAa--------------GGCGUGg -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 62301 | 0.66 | 0.820885 |
Target: 5'- gGCGCGGcuUGGUguuuGCCauaggugucuccgGGUUUCGCACUg -3' miRNA: 3'- -CGUGCCauACCA----CGG-------------CUAAGGCGUGG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 9538 | 0.66 | 0.818135 |
Target: 5'- uGCA-GG-AUGGUGCCGcacaaugcgggcUUCGCACCc -3' miRNA: 3'- -CGUgCCaUACCACGGCua----------AGGCGUGG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 5227 | 0.67 | 0.812584 |
Target: 5'- uGCACGaucgccGUGGcGUCGAcgCCGCGCUg -3' miRNA: 3'- -CGUGCca----UACCaCGGCUaaGGCGUGG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 33091 | 0.67 | 0.812584 |
Target: 5'- aGCuuGGcguUGGcUGCCuGcgUCUGCGCCg -3' miRNA: 3'- -CGugCCau-ACC-ACGG-CuaAGGCGUGG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 35688 | 0.67 | 0.812584 |
Target: 5'- uGCaACGccaucuGUGCCGAgcCCGCGCCg -3' miRNA: 3'- -CG-UGCcauac-CACGGCUaaGGCGUGG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 39016 | 0.67 | 0.79361 |
Target: 5'- aCACGa-AUGGUGCCGGcaucUUCCucaucgguaacgGCGCCa -3' miRNA: 3'- cGUGCcaUACCACGGCU----AAGG------------CGUGG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 45533 | 0.67 | 0.79361 |
Target: 5'- cGCGcCGGcgAUGGUuCCGAgcCCGC-CCa -3' miRNA: 3'- -CGU-GCCa-UACCAcGGCUaaGGCGuGG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 20531 | 0.67 | 0.79361 |
Target: 5'- aCGCGGcgacGGUGCCGGaaCCGUGCa -3' miRNA: 3'- cGUGCCaua-CCACGGCUaaGGCGUGg -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 33910 | 0.67 | 0.79361 |
Target: 5'- gGCccgauCGGUAgcggcGGUGCCGAgcUCGCGgCg -3' miRNA: 3'- -CGu----GCCAUa----CCACGGCUaaGGCGUgG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 11420 | 0.67 | 0.79361 |
Target: 5'- cGCGcCGGgccgccgaaGGUGCgCGAcacgCCGCGCCc -3' miRNA: 3'- -CGU-GCCaua------CCACG-GCUaa--GGCGUGG- -5' |
|||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 51212 | 0.67 | 0.783869 |
Target: 5'- cGCGCGGgc-GaUGCUGA--UCGCACCg -3' miRNA: 3'- -CGUGCCauaCcACGGCUaaGGCGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home