miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23981 5' -53.8 NC_005262.1 + 9472 1.15 0.000772
Target:  5'- uGCACGGUAUGGUGCCGAUUCCGCACCa -3'
miRNA:   3'- -CGUGCCAUACCACGGCUAAGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 27176 0.82 0.140606
Target:  5'- cGCAUGGUGUGGUGCCGugcugugUgGCACUa -3'
miRNA:   3'- -CGUGCCAUACCACGGCuaa----GgCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 6040 0.79 0.205089
Target:  5'- --gUGGUGUGGUGCggcaCGAUaCCGCACCa -3'
miRNA:   3'- cguGCCAUACCACG----GCUAaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 39981 0.78 0.239843
Target:  5'- cGCACGGUAUGGUGCUacUUaCUGUugCg -3'
miRNA:   3'- -CGUGCCAUACCACGGcuAA-GGCGugG- -5'
23981 5' -53.8 NC_005262.1 + 40591 0.77 0.258997
Target:  5'- cGCGCaGGUcgAUGGUGCCG-UUCUGC-CCg -3'
miRNA:   3'- -CGUG-CCA--UACCACGGCuAAGGCGuGG- -5'
23981 5' -53.8 NC_005262.1 + 53669 0.74 0.41776
Target:  5'- uGCGCGGUAcaUGcUGCCGGUcagcgcgUgCGCGCCg -3'
miRNA:   3'- -CGUGCCAU--ACcACGGCUA-------AgGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 30070 0.73 0.466982
Target:  5'- uGUugGcGUcguccGUGGUGCCaGAUUUgGCACCu -3'
miRNA:   3'- -CGugC-CA-----UACCACGG-CUAAGgCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 16974 0.73 0.481013
Target:  5'- gGUGCGGUGUGGUgcggcccggcgcgcgGCCGGgcgCCuGCAUCa -3'
miRNA:   3'- -CGUGCCAUACCA---------------CGGCUaa-GG-CGUGG- -5'
23981 5' -53.8 NC_005262.1 + 11394 0.72 0.497295
Target:  5'- cGCGCGGcuccacGCCGAagCCGCGCCg -3'
miRNA:   3'- -CGUGCCauaccaCGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 26874 0.72 0.51486
Target:  5'- cGCACGGUcacgaucgaGUGGgccggcgcguccguUGUCGAUcaUCCGCGCg -3'
miRNA:   3'- -CGUGCCA---------UACC--------------ACGGCUA--AGGCGUGg -5'
23981 5' -53.8 NC_005262.1 + 9570 0.72 0.517987
Target:  5'- cGCACca-GUGGUGCgGAaUCgGCACCa -3'
miRNA:   3'- -CGUGccaUACCACGgCUaAGgCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 38635 0.72 0.517987
Target:  5'- cCGCGGc--GGUGCCGAUcgucaCCGCgACCg -3'
miRNA:   3'- cGUGCCauaCCACGGCUAa----GGCG-UGG- -5'
23981 5' -53.8 NC_005262.1 + 21956 0.71 0.549635
Target:  5'- uGCGCGGUcgGcuucagcGCCGAUccCUGCACCu -3'
miRNA:   3'- -CGUGCCAuaCca-----CGGCUAa-GGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 10873 0.71 0.560321
Target:  5'- gGCGCGGUAaugGGUGCCacgg--GCACCa -3'
miRNA:   3'- -CGUGCCAUa--CCACGGcuaaggCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 49150 0.71 0.592689
Target:  5'- gGCACGGUggGcGUGCagg--CCGCAUCg -3'
miRNA:   3'- -CGUGCCAuaC-CACGgcuaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 10760 0.7 0.614444
Target:  5'- -aACGGuUGUGGUGauCCGc--CCGCGCCg -3'
miRNA:   3'- cgUGCC-AUACCAC--GGCuaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 40745 0.7 0.625349
Target:  5'- uGCGCgugGGUcgGGUcGCUGAcgCCGUGCCc -3'
miRNA:   3'- -CGUG---CCAuaCCA-CGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 49721 0.7 0.63626
Target:  5'- cGgGCGGcgaaccGGcgGCCGAagCCGCACCg -3'
miRNA:   3'- -CgUGCCaua---CCa-CGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 36828 0.69 0.658061
Target:  5'- gGCGCGGUugcgacguAUGGUGCCGA---CGaCACg -3'
miRNA:   3'- -CGUGCCA--------UACCACGGCUaagGC-GUGg -5'
23981 5' -53.8 NC_005262.1 + 54146 0.69 0.668931
Target:  5'- uCACGGUcacGGUGCCGucgUCGC-CCg -3'
miRNA:   3'- cGUGCCAua-CCACGGCuaaGGCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.