miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23981 5' -53.8 NC_005262.1 + 14667 0.67 0.783869
Target:  5'- uGUugGGUGcGGUGCgCGugagcgCCGCGgCg -3'
miRNA:   3'- -CGugCCAUaCCACG-GCuaa---GGCGUgG- -5'
23981 5' -53.8 NC_005262.1 + 15261 0.67 0.773974
Target:  5'- cGC-CGcGUAgcgcUGcGUGCCGuccaacaUCCGCGCCg -3'
miRNA:   3'- -CGuGC-CAU----AC-CACGGCua-----AGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 41226 0.68 0.743467
Target:  5'- uGCACGGUGaacGUGUCGuccgagCGCGCCg -3'
miRNA:   3'- -CGUGCCAUac-CACGGCuaag--GCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 53463 0.68 0.742432
Target:  5'- aCGCGGUcugcggcaggcgcAUGGcGCCGAUcaggUUCGCGCg -3'
miRNA:   3'- cGUGCCA-------------UACCaCGGCUA----AGGCGUGg -5'
23981 5' -53.8 NC_005262.1 + 50928 0.68 0.733062
Target:  5'- aGCACGaaacgaagAUGGUGCCGg--CCGCcgagcugaaGCCg -3'
miRNA:   3'- -CGUGCca------UACCACGGCuaaGGCG---------UGG- -5'
23981 5' -53.8 NC_005262.1 + 12190 0.68 0.733062
Target:  5'- cGCACGGc--GGcGCUGAUUgCGC-CCg -3'
miRNA:   3'- -CGUGCCauaCCaCGGCUAAgGCGuGG- -5'
23981 5' -53.8 NC_005262.1 + 3820 0.68 0.733062
Target:  5'- gGCcCGGaggaaGGUGCCGAgcgccCCGCGCg -3'
miRNA:   3'- -CGuGCCaua--CCACGGCUaa---GGCGUGg -5'
23981 5' -53.8 NC_005262.1 + 38540 0.68 0.733062
Target:  5'- aCACGGUcgcGGUGaCGA-UCgGCACCg -3'
miRNA:   3'- cGUGCCAua-CCACgGCUaAGgCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 3570 0.68 0.722558
Target:  5'- cGCGCuugcucuUGGUGuCCGAUUCCucguGCGCCc -3'
miRNA:   3'- -CGUGccau---ACCAC-GGCUAAGG----CGUGG- -5'
23981 5' -53.8 NC_005262.1 + 46632 0.68 0.722558
Target:  5'- uCGCGGgagcGGcgGCCGGcgCCGCGCUg -3'
miRNA:   3'- cGUGCCaua-CCa-CGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 58590 0.68 0.711965
Target:  5'- gGCAUGGaAUGG-GCUGAUgggGCGCCu -3'
miRNA:   3'- -CGUGCCaUACCaCGGCUAaggCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 7132 0.69 0.700223
Target:  5'- gGUGCGGUAUGGUGCgacgccaaacaggCGAaacacccggCCGCauGCCg -3'
miRNA:   3'- -CGUGCCAUACCACG-------------GCUaa-------GGCG--UGG- -5'
23981 5' -53.8 NC_005262.1 + 42238 0.69 0.690558
Target:  5'- uCGCGGUuccGaUGCCGAgcgCCGCGCUc -3'
miRNA:   3'- cGUGCCAua-CcACGGCUaa-GGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 19787 0.69 0.679767
Target:  5'- --uCGGgGUGGUGUCGAUgaCGCGCUg -3'
miRNA:   3'- cguGCCaUACCACGGCUAagGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 6130 0.69 0.679767
Target:  5'- gGUGCGGUAUcGUGCCGca-CCaCACCa -3'
miRNA:   3'- -CGUGCCAUAcCACGGCuaaGGcGUGG- -5'
23981 5' -53.8 NC_005262.1 + 54146 0.69 0.668931
Target:  5'- uCACGGUcacGGUGCCGucgUCGC-CCg -3'
miRNA:   3'- cGUGCCAua-CCACGGCuaaGGCGuGG- -5'
23981 5' -53.8 NC_005262.1 + 50528 0.69 0.668931
Target:  5'- uGCAgauCGGacUGGUGCUGAUgagcaggcUCgCGCACCc -3'
miRNA:   3'- -CGU---GCCauACCACGGCUA--------AG-GCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 36828 0.69 0.658061
Target:  5'- gGCGCGGUugcgacguAUGGUGCCGA---CGaCACg -3'
miRNA:   3'- -CGUGCCA--------UACCACGGCUaagGC-GUGg -5'
23981 5' -53.8 NC_005262.1 + 49721 0.7 0.63626
Target:  5'- cGgGCGGcgaaccGGcgGCCGAagCCGCACCg -3'
miRNA:   3'- -CgUGCCaua---CCa-CGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 40745 0.7 0.625349
Target:  5'- uGCGCgugGGUcgGGUcGCUGAcgCCGUGCCc -3'
miRNA:   3'- -CGUG---CCAuaCCA-CGGCUaaGGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.