miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23981 5' -53.8 NC_005262.1 + 20531 0.67 0.79361
Target:  5'- aCGCGGcgacGGUGCCGGaaCCGUGCa -3'
miRNA:   3'- cGUGCCaua-CCACGGCUaaGGCGUGg -5'
23981 5' -53.8 NC_005262.1 + 21956 0.71 0.549635
Target:  5'- uGCGCGGUcgGcuucagcGCCGAUccCUGCACCu -3'
miRNA:   3'- -CGUGCCAuaCca-----CGGCUAa-GGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 24836 0.66 0.856598
Target:  5'- gGC-CGGcgccGUGCCGAUcaccCUGCGCCa -3'
miRNA:   3'- -CGuGCCauacCACGGCUAa---GGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 26874 0.72 0.51486
Target:  5'- cGCACGGUcacgaucgaGUGGgccggcgcguccguUGUCGAUcaUCCGCGCg -3'
miRNA:   3'- -CGUGCCA---------UACC--------------ACGGCUA--AGGCGUGg -5'
23981 5' -53.8 NC_005262.1 + 27176 0.82 0.140606
Target:  5'- cGCAUGGUGUGGUGCCGugcugugUgGCACUa -3'
miRNA:   3'- -CGUGCCAUACCACGGCuaa----GgCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 27259 0.66 0.821797
Target:  5'- aGCACGGcaccacaccAUGcG-GCCGGUgugCCGgCACCa -3'
miRNA:   3'- -CGUGCCa--------UAC-CaCGGCUAa--GGC-GUGG- -5'
23981 5' -53.8 NC_005262.1 + 30070 0.73 0.466982
Target:  5'- uGUugGcGUcguccGUGGUGCCaGAUUUgGCACCu -3'
miRNA:   3'- -CGugC-CA-----UACCACGG-CUAAGgCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 33091 0.67 0.812584
Target:  5'- aGCuuGGcguUGGcUGCCuGcgUCUGCGCCg -3'
miRNA:   3'- -CGugCCau-ACC-ACGG-CuaAGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 33910 0.67 0.79361
Target:  5'- gGCccgauCGGUAgcggcGGUGCCGAgcUCGCGgCg -3'
miRNA:   3'- -CGu----GCCAUa----CCACGGCUaaGGCGUgG- -5'
23981 5' -53.8 NC_005262.1 + 35688 0.67 0.812584
Target:  5'- uGCaACGccaucuGUGCCGAgcCCGCGCCg -3'
miRNA:   3'- -CG-UGCcauac-CACGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 35923 0.66 0.821797
Target:  5'- -gGCGGUcgcGGcGCCGAcgCCGCuCCg -3'
miRNA:   3'- cgUGCCAua-CCaCGGCUaaGGCGuGG- -5'
23981 5' -53.8 NC_005262.1 + 36079 0.66 0.830814
Target:  5'- cGCGCGGcacGUGGaacGCaCGAUcCCGCgguGCCa -3'
miRNA:   3'- -CGUGCCa--UACCa--CG-GCUAaGGCG---UGG- -5'
23981 5' -53.8 NC_005262.1 + 36828 0.69 0.658061
Target:  5'- gGCGCGGUugcgacguAUGGUGCCGA---CGaCACg -3'
miRNA:   3'- -CGUGCCA--------UACCACGGCUaagGC-GUGg -5'
23981 5' -53.8 NC_005262.1 + 38540 0.68 0.733062
Target:  5'- aCACGGUcgcGGUGaCGA-UCgGCACCg -3'
miRNA:   3'- cGUGCCAua-CCACgGCUaAGgCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 38635 0.72 0.517987
Target:  5'- cCGCGGc--GGUGCCGAUcgucaCCGCgACCg -3'
miRNA:   3'- cGUGCCauaCCACGGCUAa----GGCG-UGG- -5'
23981 5' -53.8 NC_005262.1 + 39016 0.67 0.79361
Target:  5'- aCACGa-AUGGUGCCGGcaucUUCCucaucgguaacgGCGCCa -3'
miRNA:   3'- cGUGCcaUACCACGGCU----AAGG------------CGUGG- -5'
23981 5' -53.8 NC_005262.1 + 39981 0.78 0.239843
Target:  5'- cGCACGGUAUGGUGCUacUUaCUGUugCg -3'
miRNA:   3'- -CGUGCCAUACCACGGcuAA-GGCGugG- -5'
23981 5' -53.8 NC_005262.1 + 40591 0.77 0.258997
Target:  5'- cGCGCaGGUcgAUGGUGCCG-UUCUGC-CCg -3'
miRNA:   3'- -CGUG-CCA--UACCACGGCuAAGGCGuGG- -5'
23981 5' -53.8 NC_005262.1 + 40745 0.7 0.625349
Target:  5'- uGCGCgugGGUcgGGUcGCUGAcgCCGUGCCc -3'
miRNA:   3'- -CGUG---CCAuaCCA-CGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 41226 0.68 0.743467
Target:  5'- uGCACGGUGaacGUGUCGuccgagCGCGCCg -3'
miRNA:   3'- -CGUGCCAUac-CACGGCuaag--GCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.