miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23981 5' -53.8 NC_005262.1 + 62301 0.66 0.820885
Target:  5'- gGCGCGGcuUGGUguuuGCCauaggugucuccgGGUUUCGCACUg -3'
miRNA:   3'- -CGUGCCauACCA----CGG-------------CUAAGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 58590 0.68 0.711965
Target:  5'- gGCAUGGaAUGG-GCUGAUgggGCGCCu -3'
miRNA:   3'- -CGUGCCaUACCaCGGCUAaggCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 54146 0.69 0.668931
Target:  5'- uCACGGUcacGGUGCCGucgUCGC-CCg -3'
miRNA:   3'- cGUGCCAua-CCACGGCuaaGGCGuGG- -5'
23981 5' -53.8 NC_005262.1 + 53669 0.74 0.41776
Target:  5'- uGCGCGGUAcaUGcUGCCGGUcagcgcgUgCGCGCCg -3'
miRNA:   3'- -CGUGCCAU--ACcACGGCUA-------AgGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 53463 0.68 0.742432
Target:  5'- aCGCGGUcugcggcaggcgcAUGGcGCCGAUcaggUUCGCGCg -3'
miRNA:   3'- cGUGCCA-------------UACCaCGGCUA----AGGCGUGg -5'
23981 5' -53.8 NC_005262.1 + 51982 0.66 0.848223
Target:  5'- -aGCGGUc-GGUGCCG-UUCgGCGgCg -3'
miRNA:   3'- cgUGCCAuaCCACGGCuAAGgCGUgG- -5'
23981 5' -53.8 NC_005262.1 + 51212 0.67 0.783869
Target:  5'- cGCGCGGgc-GaUGCUGA--UCGCACCg -3'
miRNA:   3'- -CGUGCCauaCcACGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 50928 0.68 0.733062
Target:  5'- aGCACGaaacgaagAUGGUGCCGg--CCGCcgagcugaaGCCg -3'
miRNA:   3'- -CGUGCca------UACCACGGCuaaGGCG---------UGG- -5'
23981 5' -53.8 NC_005262.1 + 50528 0.69 0.668931
Target:  5'- uGCAgauCGGacUGGUGCUGAUgagcaggcUCgCGCACCc -3'
miRNA:   3'- -CGU---GCCauACCACGGCUA--------AG-GCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 49721 0.7 0.63626
Target:  5'- cGgGCGGcgaaccGGcgGCCGAagCCGCACCg -3'
miRNA:   3'- -CgUGCCaua---CCa-CGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 49150 0.71 0.592689
Target:  5'- gGCACGGUggGcGUGCagg--CCGCAUCg -3'
miRNA:   3'- -CGUGCCAuaC-CACGgcuaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 46783 0.66 0.821797
Target:  5'- cGCGCGGUAUcaacggcGGcgaGCCGAUgaccgacgugcaggcCCGCGCg -3'
miRNA:   3'- -CGUGCCAUA-------CCa--CGGCUAa--------------GGCGUGg -5'
23981 5' -53.8 NC_005262.1 + 46632 0.68 0.722558
Target:  5'- uCGCGGgagcGGcgGCCGGcgCCGCGCUg -3'
miRNA:   3'- cGUGCCaua-CCa-CGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 45533 0.67 0.79361
Target:  5'- cGCGcCGGcgAUGGUuCCGAgcCCGC-CCa -3'
miRNA:   3'- -CGU-GCCa-UACCAcGGCUaaGGCGuGG- -5'
23981 5' -53.8 NC_005262.1 + 42238 0.69 0.690558
Target:  5'- uCGCGGUuccGaUGCCGAgcgCCGCGCUc -3'
miRNA:   3'- cGUGCCAua-CcACGGCUaa-GGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 41626 0.66 0.839626
Target:  5'- -aACGGUgacgccguacaAUGGUGUCGGUcagguuguuUCCggcgGCGCCg -3'
miRNA:   3'- cgUGCCA-----------UACCACGGCUA---------AGG----CGUGG- -5'
23981 5' -53.8 NC_005262.1 + 41226 0.68 0.743467
Target:  5'- uGCACGGUGaacGUGUCGuccgagCGCGCCg -3'
miRNA:   3'- -CGUGCCAUac-CACGGCuaag--GCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 40745 0.7 0.625349
Target:  5'- uGCGCgugGGUcgGGUcGCUGAcgCCGUGCCc -3'
miRNA:   3'- -CGUG---CCAuaCCA-CGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 40591 0.77 0.258997
Target:  5'- cGCGCaGGUcgAUGGUGCCG-UUCUGC-CCg -3'
miRNA:   3'- -CGUG-CCA--UACCACGGCuAAGGCGuGG- -5'
23981 5' -53.8 NC_005262.1 + 39981 0.78 0.239843
Target:  5'- cGCACGGUAUGGUGCUacUUaCUGUugCg -3'
miRNA:   3'- -CGUGCCAUACCACGGcuAA-GGCGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.