Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23981 | 5' | -53.8 | NC_005262.1 | + | 39016 | 0.67 | 0.79361 |
Target: 5'- aCACGa-AUGGUGCCGGcaucUUCCucaucgguaacgGCGCCa -3' miRNA: 3'- cGUGCcaUACCACGGCU----AAGG------------CGUGG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 38635 | 0.72 | 0.517987 |
Target: 5'- cCGCGGc--GGUGCCGAUcgucaCCGCgACCg -3' miRNA: 3'- cGUGCCauaCCACGGCUAa----GGCG-UGG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 38540 | 0.68 | 0.733062 |
Target: 5'- aCACGGUcgcGGUGaCGA-UCgGCACCg -3' miRNA: 3'- cGUGCCAua-CCACgGCUaAGgCGUGG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 36828 | 0.69 | 0.658061 |
Target: 5'- gGCGCGGUugcgacguAUGGUGCCGA---CGaCACg -3' miRNA: 3'- -CGUGCCA--------UACCACGGCUaagGC-GUGg -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 36079 | 0.66 | 0.830814 |
Target: 5'- cGCGCGGcacGUGGaacGCaCGAUcCCGCgguGCCa -3' miRNA: 3'- -CGUGCCa--UACCa--CG-GCUAaGGCG---UGG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 35923 | 0.66 | 0.821797 |
Target: 5'- -gGCGGUcgcGGcGCCGAcgCCGCuCCg -3' miRNA: 3'- cgUGCCAua-CCaCGGCUaaGGCGuGG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 35688 | 0.67 | 0.812584 |
Target: 5'- uGCaACGccaucuGUGCCGAgcCCGCGCCg -3' miRNA: 3'- -CG-UGCcauac-CACGGCUaaGGCGUGG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 33910 | 0.67 | 0.79361 |
Target: 5'- gGCccgauCGGUAgcggcGGUGCCGAgcUCGCGgCg -3' miRNA: 3'- -CGu----GCCAUa----CCACGGCUaaGGCGUgG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 33091 | 0.67 | 0.812584 |
Target: 5'- aGCuuGGcguUGGcUGCCuGcgUCUGCGCCg -3' miRNA: 3'- -CGugCCau-ACC-ACGG-CuaAGGCGUGG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 30070 | 0.73 | 0.466982 |
Target: 5'- uGUugGcGUcguccGUGGUGCCaGAUUUgGCACCu -3' miRNA: 3'- -CGugC-CA-----UACCACGG-CUAAGgCGUGG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 27259 | 0.66 | 0.821797 |
Target: 5'- aGCACGGcaccacaccAUGcG-GCCGGUgugCCGgCACCa -3' miRNA: 3'- -CGUGCCa--------UAC-CaCGGCUAa--GGC-GUGG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 27176 | 0.82 | 0.140606 |
Target: 5'- cGCAUGGUGUGGUGCCGugcugugUgGCACUa -3' miRNA: 3'- -CGUGCCAUACCACGGCuaa----GgCGUGG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 26874 | 0.72 | 0.51486 |
Target: 5'- cGCACGGUcacgaucgaGUGGgccggcgcguccguUGUCGAUcaUCCGCGCg -3' miRNA: 3'- -CGUGCCA---------UACC--------------ACGGCUA--AGGCGUGg -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 24836 | 0.66 | 0.856598 |
Target: 5'- gGC-CGGcgccGUGCCGAUcaccCUGCGCCa -3' miRNA: 3'- -CGuGCCauacCACGGCUAa---GGCGUGG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 21956 | 0.71 | 0.549635 |
Target: 5'- uGCGCGGUcgGcuucagcGCCGAUccCUGCACCu -3' miRNA: 3'- -CGUGCCAuaCca-----CGGCUAa-GGCGUGG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 20531 | 0.67 | 0.79361 |
Target: 5'- aCGCGGcgacGGUGCCGGaaCCGUGCa -3' miRNA: 3'- cGUGCCaua-CCACGGCUaaGGCGUGg -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 19787 | 0.69 | 0.679767 |
Target: 5'- --uCGGgGUGGUGUCGAUgaCGCGCUg -3' miRNA: 3'- cguGCCaUACCACGGCUAagGCGUGG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 16974 | 0.73 | 0.481013 |
Target: 5'- gGUGCGGUGUGGUgcggcccggcgcgcgGCCGGgcgCCuGCAUCa -3' miRNA: 3'- -CGUGCCAUACCA---------------CGGCUaa-GG-CGUGG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 16441 | 0.66 | 0.856598 |
Target: 5'- aCGCGGc--GGcGCCGAUcagCGCGCCg -3' miRNA: 3'- cGUGCCauaCCaCGGCUAag-GCGUGG- -5' |
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23981 | 5' | -53.8 | NC_005262.1 | + | 15261 | 0.67 | 0.773974 |
Target: 5'- cGC-CGcGUAgcgcUGcGUGCCGuccaacaUCCGCGCCg -3' miRNA: 3'- -CGuGC-CAU----AC-CACGGCua-----AGGCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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