miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23981 5' -53.8 NC_005262.1 + 14667 0.67 0.783869
Target:  5'- uGUugGGUGcGGUGCgCGugagcgCCGCGgCg -3'
miRNA:   3'- -CGugCCAUaCCACG-GCuaa---GGCGUgG- -5'
23981 5' -53.8 NC_005262.1 + 12845 0.66 0.856598
Target:  5'- uCGCGGgaaccGUcGUGCCGAgcUUCGCGCUg -3'
miRNA:   3'- cGUGCCa----UAcCACGGCUa-AGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 12190 0.68 0.733062
Target:  5'- cGCACGGc--GGcGCUGAUUgCGC-CCg -3'
miRNA:   3'- -CGUGCCauaCCaCGGCUAAgGCGuGG- -5'
23981 5' -53.8 NC_005262.1 + 11420 0.67 0.79361
Target:  5'- cGCGcCGGgccgccgaaGGUGCgCGAcacgCCGCGCCc -3'
miRNA:   3'- -CGU-GCCaua------CCACG-GCUaa--GGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 11394 0.72 0.497295
Target:  5'- cGCGCGGcuccacGCCGAagCCGCGCCg -3'
miRNA:   3'- -CGUGCCauaccaCGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 10873 0.71 0.560321
Target:  5'- gGCGCGGUAaugGGUGCCacgg--GCACCa -3'
miRNA:   3'- -CGUGCCAUa--CCACGGcuaaggCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 10760 0.7 0.614444
Target:  5'- -aACGGuUGUGGUGauCCGc--CCGCGCCg -3'
miRNA:   3'- cgUGCC-AUACCAC--GGCuaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 9570 0.72 0.517987
Target:  5'- cGCACca-GUGGUGCgGAaUCgGCACCa -3'
miRNA:   3'- -CGUGccaUACCACGgCUaAGgCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 9538 0.66 0.818135
Target:  5'- uGCA-GG-AUGGUGCCGcacaaugcgggcUUCGCACCc -3'
miRNA:   3'- -CGUgCCaUACCACGGCua----------AGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 9472 1.15 0.000772
Target:  5'- uGCACGGUAUGGUGCCGAUUCCGCACCa -3'
miRNA:   3'- -CGUGCCAUACCACGGCUAAGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 7132 0.69 0.700223
Target:  5'- gGUGCGGUAUGGUGCgacgccaaacaggCGAaacacccggCCGCauGCCg -3'
miRNA:   3'- -CGUGCCAUACCACG-------------GCUaa-------GGCG--UGG- -5'
23981 5' -53.8 NC_005262.1 + 6130 0.69 0.679767
Target:  5'- gGUGCGGUAUcGUGCCGca-CCaCACCa -3'
miRNA:   3'- -CGUGCCAUAcCACGGCuaaGGcGUGG- -5'
23981 5' -53.8 NC_005262.1 + 6040 0.79 0.205089
Target:  5'- --gUGGUGUGGUGCggcaCGAUaCCGCACCa -3'
miRNA:   3'- cguGCCAUACCACG----GCUAaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 5227 0.67 0.812584
Target:  5'- uGCACGaucgccGUGGcGUCGAcgCCGCGCUg -3'
miRNA:   3'- -CGUGCca----UACCaCGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 3820 0.68 0.733062
Target:  5'- gGCcCGGaggaaGGUGCCGAgcgccCCGCGCg -3'
miRNA:   3'- -CGuGCCaua--CCACGGCUaa---GGCGUGg -5'
23981 5' -53.8 NC_005262.1 + 3570 0.68 0.722558
Target:  5'- cGCGCuugcucuUGGUGuCCGAUUCCucguGCGCCc -3'
miRNA:   3'- -CGUGccau---ACCAC-GGCUAAGG----CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.