miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23981 5' -53.8 NC_005262.1 + 11420 0.67 0.79361
Target:  5'- cGCGcCGGgccgccgaaGGUGCgCGAcacgCCGCGCCc -3'
miRNA:   3'- -CGU-GCCaua------CCACG-GCUaa--GGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 7132 0.69 0.700223
Target:  5'- gGUGCGGUAUGGUGCgacgccaaacaggCGAaacacccggCCGCauGCCg -3'
miRNA:   3'- -CGUGCCAUACCACG-------------GCUaa-------GGCG--UGG- -5'
23981 5' -53.8 NC_005262.1 + 58590 0.68 0.711965
Target:  5'- gGCAUGGaAUGG-GCUGAUgggGCGCCu -3'
miRNA:   3'- -CGUGCCaUACCaCGGCUAaggCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 3570 0.68 0.722558
Target:  5'- cGCGCuugcucuUGGUGuCCGAUUCCucguGCGCCc -3'
miRNA:   3'- -CGUGccau---ACCAC-GGCUAAGG----CGUGG- -5'
23981 5' -53.8 NC_005262.1 + 3820 0.68 0.733062
Target:  5'- gGCcCGGaggaaGGUGCCGAgcgccCCGCGCg -3'
miRNA:   3'- -CGuGCCaua--CCACGGCUaa---GGCGUGg -5'
23981 5' -53.8 NC_005262.1 + 50928 0.68 0.733062
Target:  5'- aGCACGaaacgaagAUGGUGCCGg--CCGCcgagcugaaGCCg -3'
miRNA:   3'- -CGUGCca------UACCACGGCuaaGGCG---------UGG- -5'
23981 5' -53.8 NC_005262.1 + 38540 0.68 0.733062
Target:  5'- aCACGGUcgcGGUGaCGA-UCgGCACCg -3'
miRNA:   3'- cGUGCCAua-CCACgGCUaAGgCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 51212 0.67 0.783869
Target:  5'- cGCGCGGgc-GaUGCUGA--UCGCACCg -3'
miRNA:   3'- -CGUGCCauaCcACGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 39016 0.67 0.79361
Target:  5'- aCACGa-AUGGUGCCGGcaucUUCCucaucgguaacgGCGCCa -3'
miRNA:   3'- cGUGCcaUACCACGGCU----AAGG------------CGUGG- -5'
23981 5' -53.8 NC_005262.1 + 42238 0.69 0.690558
Target:  5'- uCGCGGUuccGaUGCCGAgcgCCGCGCUc -3'
miRNA:   3'- cGUGCCAua-CcACGGCUaa-GGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 50528 0.69 0.668931
Target:  5'- uGCAgauCGGacUGGUGCUGAUgagcaggcUCgCGCACCc -3'
miRNA:   3'- -CGU---GCCauACCACGGCUA--------AG-GCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 36828 0.69 0.658061
Target:  5'- gGCGCGGUugcgacguAUGGUGCCGA---CGaCACg -3'
miRNA:   3'- -CGUGCCA--------UACCACGGCUaagGC-GUGg -5'
23981 5' -53.8 NC_005262.1 + 27176 0.82 0.140606
Target:  5'- cGCAUGGUGUGGUGCCGugcugugUgGCACUa -3'
miRNA:   3'- -CGUGCCAUACCACGGCuaa----GgCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 6040 0.79 0.205089
Target:  5'- --gUGGUGUGGUGCggcaCGAUaCCGCACCa -3'
miRNA:   3'- cguGCCAUACCACG----GCUAaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 11394 0.72 0.497295
Target:  5'- cGCGCGGcuccacGCCGAagCCGCGCCg -3'
miRNA:   3'- -CGUGCCauaccaCGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 26874 0.72 0.51486
Target:  5'- cGCACGGUcacgaucgaGUGGgccggcgcguccguUGUCGAUcaUCCGCGCg -3'
miRNA:   3'- -CGUGCCA---------UACC--------------ACGGCUA--AGGCGUGg -5'
23981 5' -53.8 NC_005262.1 + 10873 0.71 0.560321
Target:  5'- gGCGCGGUAaugGGUGCCacgg--GCACCa -3'
miRNA:   3'- -CGUGCCAUa--CCACGGcuaaggCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 49150 0.71 0.592689
Target:  5'- gGCACGGUggGcGUGCagg--CCGCAUCg -3'
miRNA:   3'- -CGUGCCAuaC-CACGgcuaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 10760 0.7 0.614444
Target:  5'- -aACGGuUGUGGUGauCCGc--CCGCGCCg -3'
miRNA:   3'- cgUGCC-AUACCAC--GGCuaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 49721 0.7 0.63626
Target:  5'- cGgGCGGcgaaccGGcgGCCGAagCCGCACCg -3'
miRNA:   3'- -CgUGCCaua---CCa-CGGCUaaGGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.