miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23981 5' -53.8 NC_005262.1 + 10873 0.71 0.560321
Target:  5'- gGCGCGGUAaugGGUGCCacgg--GCACCa -3'
miRNA:   3'- -CGUGCCAUa--CCACGGcuaaggCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 49150 0.71 0.592689
Target:  5'- gGCACGGUggGcGUGCagg--CCGCAUCg -3'
miRNA:   3'- -CGUGCCAuaC-CACGgcuaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 10760 0.7 0.614444
Target:  5'- -aACGGuUGUGGUGauCCGc--CCGCGCCg -3'
miRNA:   3'- cgUGCC-AUACCAC--GGCuaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 49721 0.7 0.63626
Target:  5'- cGgGCGGcgaaccGGcgGCCGAagCCGCACCg -3'
miRNA:   3'- -CgUGCCaua---CCa-CGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 36828 0.69 0.658061
Target:  5'- gGCGCGGUugcgacguAUGGUGCCGA---CGaCACg -3'
miRNA:   3'- -CGUGCCA--------UACCACGGCUaagGC-GUGg -5'
23981 5' -53.8 NC_005262.1 + 50528 0.69 0.668931
Target:  5'- uGCAgauCGGacUGGUGCUGAUgagcaggcUCgCGCACCc -3'
miRNA:   3'- -CGU---GCCauACCACGGCUA--------AG-GCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 42238 0.69 0.690558
Target:  5'- uCGCGGUuccGaUGCCGAgcgCCGCGCUc -3'
miRNA:   3'- cGUGCCAua-CcACGGCUaa-GGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 7132 0.69 0.700223
Target:  5'- gGUGCGGUAUGGUGCgacgccaaacaggCGAaacacccggCCGCauGCCg -3'
miRNA:   3'- -CGUGCCAUACCACG-------------GCUaa-------GGCG--UGG- -5'
23981 5' -53.8 NC_005262.1 + 35688 0.67 0.812584
Target:  5'- uGCaACGccaucuGUGCCGAgcCCGCGCCg -3'
miRNA:   3'- -CG-UGCcauac-CACGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 20531 0.67 0.79361
Target:  5'- aCGCGGcgacGGUGCCGGaaCCGUGCa -3'
miRNA:   3'- cGUGCCaua-CCACGGCUaaGGCGUGg -5'
23981 5' -53.8 NC_005262.1 + 45533 0.67 0.79361
Target:  5'- cGCGcCGGcgAUGGUuCCGAgcCCGC-CCa -3'
miRNA:   3'- -CGU-GCCa-UACCAcGGCUaaGGCGuGG- -5'
23981 5' -53.8 NC_005262.1 + 14667 0.67 0.783869
Target:  5'- uGUugGGUGcGGUGCgCGugagcgCCGCGgCg -3'
miRNA:   3'- -CGugCCAUaCCACG-GCuaa---GGCGUgG- -5'
23981 5' -53.8 NC_005262.1 + 15261 0.67 0.773974
Target:  5'- cGC-CGcGUAgcgcUGcGUGCCGuccaacaUCCGCGCCg -3'
miRNA:   3'- -CGuGC-CAU----AC-CACGGCua-----AGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 33091 0.67 0.812584
Target:  5'- aGCuuGGcguUGGcUGCCuGcgUCUGCGCCg -3'
miRNA:   3'- -CGugCCau-ACC-ACGG-CuaAGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 9538 0.66 0.818135
Target:  5'- uGCA-GG-AUGGUGCCGcacaaugcgggcUUCGCACCc -3'
miRNA:   3'- -CGUgCCaUACCACGGCua----------AGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 35923 0.66 0.821797
Target:  5'- -gGCGGUcgcGGcGCCGAcgCCGCuCCg -3'
miRNA:   3'- cgUGCCAua-CCaCGGCUaaGGCGuGG- -5'
23981 5' -53.8 NC_005262.1 + 27259 0.66 0.821797
Target:  5'- aGCACGGcaccacaccAUGcG-GCCGGUgugCCGgCACCa -3'
miRNA:   3'- -CGUGCCa--------UAC-CaCGGCUAa--GGC-GUGG- -5'
23981 5' -53.8 NC_005262.1 + 36079 0.66 0.830814
Target:  5'- cGCGCGGcacGUGGaacGCaCGAUcCCGCgguGCCa -3'
miRNA:   3'- -CGUGCCa--UACCa--CG-GCUAaGGCG---UGG- -5'
23981 5' -53.8 NC_005262.1 + 51982 0.66 0.848223
Target:  5'- -aGCGGUc-GGUGCCG-UUCgGCGgCg -3'
miRNA:   3'- cgUGCCAuaCCACGGCuAAGgCGUgG- -5'
23981 5' -53.8 NC_005262.1 + 39981 0.78 0.239843
Target:  5'- cGCACGGUAUGGUGCUacUUaCUGUugCg -3'
miRNA:   3'- -CGUGCCAUACCACGGcuAA-GGCGugG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.