miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23981 5' -53.8 NC_005262.1 + 16441 0.66 0.856598
Target:  5'- aCGCGGc--GGcGCCGAUcagCGCGCCg -3'
miRNA:   3'- cGUGCCauaCCaCGGCUAag-GCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 6130 0.69 0.679767
Target:  5'- gGUGCGGUAUcGUGCCGca-CCaCACCa -3'
miRNA:   3'- -CGUGCCAUAcCACGGCuaaGGcGUGG- -5'
23981 5' -53.8 NC_005262.1 + 40745 0.7 0.625349
Target:  5'- uGCGCgugGGUcgGGUcGCUGAcgCCGUGCCc -3'
miRNA:   3'- -CGUG---CCAuaCCA-CGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 39981 0.78 0.239843
Target:  5'- cGCACGGUAUGGUGCUacUUaCUGUugCg -3'
miRNA:   3'- -CGUGCCAUACCACGGcuAA-GGCGugG- -5'
23981 5' -53.8 NC_005262.1 + 35923 0.66 0.821797
Target:  5'- -gGCGGUcgcGGcGCCGAcgCCGCuCCg -3'
miRNA:   3'- cgUGCCAua-CCaCGGCUaaGGCGuGG- -5'
23981 5' -53.8 NC_005262.1 + 9538 0.66 0.818135
Target:  5'- uGCA-GG-AUGGUGCCGcacaaugcgggcUUCGCACCc -3'
miRNA:   3'- -CGUgCCaUACCACGGCua----------AGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 35688 0.67 0.812584
Target:  5'- uGCaACGccaucuGUGCCGAgcCCGCGCCg -3'
miRNA:   3'- -CG-UGCcauac-CACGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 20531 0.67 0.79361
Target:  5'- aCGCGGcgacGGUGCCGGaaCCGUGCa -3'
miRNA:   3'- cGUGCCaua-CCACGGCUaaGGCGUGg -5'
23981 5' -53.8 NC_005262.1 + 15261 0.67 0.773974
Target:  5'- cGC-CGcGUAgcgcUGcGUGCCGuccaacaUCCGCGCCg -3'
miRNA:   3'- -CGuGC-CAU----AC-CACGGCua-----AGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 19787 0.69 0.679767
Target:  5'- --uCGGgGUGGUGUCGAUgaCGCGCUg -3'
miRNA:   3'- cguGCCaUACCACGGCUAagGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 53463 0.68 0.742432
Target:  5'- aCGCGGUcugcggcaggcgcAUGGcGCCGAUcaggUUCGCGCg -3'
miRNA:   3'- cGUGCCA-------------UACCaCGGCUA----AGGCGUGg -5'
23981 5' -53.8 NC_005262.1 + 14667 0.67 0.783869
Target:  5'- uGUugGGUGcGGUGCgCGugagcgCCGCGgCg -3'
miRNA:   3'- -CGugCCAUaCCACG-GCuaa---GGCGUgG- -5'
23981 5' -53.8 NC_005262.1 + 51982 0.66 0.848223
Target:  5'- -aGCGGUc-GGUGCCG-UUCgGCGgCg -3'
miRNA:   3'- cgUGCCAuaCCACGGCuAAGgCGUgG- -5'
23981 5' -53.8 NC_005262.1 + 12190 0.68 0.733062
Target:  5'- cGCACGGc--GGcGCUGAUUgCGC-CCg -3'
miRNA:   3'- -CGUGCCauaCCaCGGCUAAgGCGuGG- -5'
23981 5' -53.8 NC_005262.1 + 36079 0.66 0.830814
Target:  5'- cGCGCGGcacGUGGaacGCaCGAUcCCGCgguGCCa -3'
miRNA:   3'- -CGUGCCa--UACCa--CG-GCUAaGGCG---UGG- -5'
23981 5' -53.8 NC_005262.1 + 45533 0.67 0.79361
Target:  5'- cGCGcCGGcgAUGGUuCCGAgcCCGC-CCa -3'
miRNA:   3'- -CGU-GCCa-UACCAcGGCUaaGGCGuGG- -5'
23981 5' -53.8 NC_005262.1 + 46632 0.68 0.722558
Target:  5'- uCGCGGgagcGGcgGCCGGcgCCGCGCUg -3'
miRNA:   3'- cGUGCCaua-CCa-CGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 54146 0.69 0.668931
Target:  5'- uCACGGUcacGGUGCCGucgUCGC-CCg -3'
miRNA:   3'- cGUGCCAua-CCACGGCuaaGGCGuGG- -5'
23981 5' -53.8 NC_005262.1 + 27259 0.66 0.821797
Target:  5'- aGCACGGcaccacaccAUGcG-GCCGGUgugCCGgCACCa -3'
miRNA:   3'- -CGUGCCa--------UAC-CaCGGCUAa--GGC-GUGG- -5'
23981 5' -53.8 NC_005262.1 + 33091 0.67 0.812584
Target:  5'- aGCuuGGcguUGGcUGCCuGcgUCUGCGCCg -3'
miRNA:   3'- -CGugCCau-ACC-ACGG-CuaAGGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.