miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23981 5' -53.8 NC_005262.1 + 7132 0.69 0.700223
Target:  5'- gGUGCGGUAUGGUGCgacgccaaacaggCGAaacacccggCCGCauGCCg -3'
miRNA:   3'- -CGUGCCAUACCACG-------------GCUaa-------GGCG--UGG- -5'
23981 5' -53.8 NC_005262.1 + 58590 0.68 0.711965
Target:  5'- gGCAUGGaAUGG-GCUGAUgggGCGCCu -3'
miRNA:   3'- -CGUGCCaUACCaCGGCUAaggCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 3570 0.68 0.722558
Target:  5'- cGCGCuugcucuUGGUGuCCGAUUCCucguGCGCCc -3'
miRNA:   3'- -CGUGccau---ACCAC-GGCUAAGG----CGUGG- -5'
23981 5' -53.8 NC_005262.1 + 12845 0.66 0.856598
Target:  5'- uCGCGGgaaccGUcGUGCCGAgcUUCGCGCUg -3'
miRNA:   3'- cGUGCCa----UAcCACGGCUa-AGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 41626 0.66 0.839626
Target:  5'- -aACGGUgacgccguacaAUGGUGUCGGUcagguuguuUCCggcgGCGCCg -3'
miRNA:   3'- cgUGCCA-----------UACCACGGCUA---------AGG----CGUGG- -5'
23981 5' -53.8 NC_005262.1 + 46783 0.66 0.821797
Target:  5'- cGCGCGGUAUcaacggcGGcgaGCCGAUgaccgacgugcaggcCCGCGCg -3'
miRNA:   3'- -CGUGCCAUA-------CCa--CGGCUAa--------------GGCGUGg -5'
23981 5' -53.8 NC_005262.1 + 62301 0.66 0.820885
Target:  5'- gGCGCGGcuUGGUguuuGCCauaggugucuccgGGUUUCGCACUg -3'
miRNA:   3'- -CGUGCCauACCA----CGG-------------CUAAGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 5227 0.67 0.812584
Target:  5'- uGCACGaucgccGUGGcGUCGAcgCCGCGCUg -3'
miRNA:   3'- -CGUGCca----UACCaCGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 11420 0.67 0.79361
Target:  5'- cGCGcCGGgccgccgaaGGUGCgCGAcacgCCGCGCCc -3'
miRNA:   3'- -CGU-GCCaua------CCACG-GCUaa--GGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 39016 0.67 0.79361
Target:  5'- aCACGa-AUGGUGCCGGcaucUUCCucaucgguaacgGCGCCa -3'
miRNA:   3'- cGUGCcaUACCACGGCU----AAGG------------CGUGG- -5'
23981 5' -53.8 NC_005262.1 + 33910 0.67 0.79361
Target:  5'- gGCccgauCGGUAgcggcGGUGCCGAgcUCGCGgCg -3'
miRNA:   3'- -CGu----GCCAUa----CCACGGCUaaGGCGUgG- -5'
23981 5' -53.8 NC_005262.1 + 51212 0.67 0.783869
Target:  5'- cGCGCGGgc-GaUGCUGA--UCGCACCg -3'
miRNA:   3'- -CGUGCCauaCcACGGCUaaGGCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 38540 0.68 0.733062
Target:  5'- aCACGGUcgcGGUGaCGA-UCgGCACCg -3'
miRNA:   3'- cGUGCCAua-CCACgGCUaAGgCGUGG- -5'
23981 5' -53.8 NC_005262.1 + 50928 0.68 0.733062
Target:  5'- aGCACGaaacgaagAUGGUGCCGg--CCGCcgagcugaaGCCg -3'
miRNA:   3'- -CGUGCca------UACCACGGCuaaGGCG---------UGG- -5'
23981 5' -53.8 NC_005262.1 + 3820 0.68 0.733062
Target:  5'- gGCcCGGaggaaGGUGCCGAgcgccCCGCGCg -3'
miRNA:   3'- -CGuGCCaua--CCACGGCUaa---GGCGUGg -5'
23981 5' -53.8 NC_005262.1 + 9472 1.15 0.000772
Target:  5'- uGCACGGUAUGGUGCCGAUUCCGCACCa -3'
miRNA:   3'- -CGUGCCAUACCACGGCUAAGGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.