miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23982 5' -66.1 NC_005262.1 + 55216 0.66 0.285019
Target:  5'- cGCCGuCGCuucguCGCGCaGGCCG-CGCUCa- -3'
miRNA:   3'- -CGGC-GCGc----GUGCG-CCGGCcGCGAGgg -5'
23982 5' -66.1 NC_005262.1 + 47792 0.66 0.285019
Target:  5'- aGCCGC-CGCccgGCGCGGUgcuUGGCGUcagaCCg -3'
miRNA:   3'- -CGGCGcGCG---UGCGCCG---GCCGCGag--GG- -5'
23982 5' -66.1 NC_005262.1 + 11429 0.66 0.283055
Target:  5'- uGCCGCGCGCGaGCGGCgucuugCGGaggaggGCcgauuucuucaccgUCCCu -3'
miRNA:   3'- -CGGCGCGCGUgCGCCG------GCCg-----CG--------------AGGG- -5'
23982 5' -66.1 NC_005262.1 + 16286 0.66 0.278512
Target:  5'- uGCUGCGCGCcgcuCGCGGC--GUGCaaCCg -3'
miRNA:   3'- -CGGCGCGCGu---GCGCCGgcCGCGagGG- -5'
23982 5' -66.1 NC_005262.1 + 59896 0.66 0.278512
Target:  5'- cGUgGCGCcUGCG-GGCCGGUGC-CCUc -3'
miRNA:   3'- -CGgCGCGcGUGCgCCGGCCGCGaGGG- -5'
23982 5' -66.1 NC_005262.1 + 57800 0.66 0.278512
Target:  5'- uGCgGCGCGCGuCGUGGC-GGC-CUaCCg -3'
miRNA:   3'- -CGgCGCGCGU-GCGCCGgCCGcGAgGG- -5'
23982 5' -66.1 NC_005262.1 + 41521 0.66 0.278512
Target:  5'- aGCCGCGcCGCcCGUGuuaGUCGGCGCa--- -3'
miRNA:   3'- -CGGCGC-GCGuGCGC---CGGCCGCGaggg -5'
23982 5' -66.1 NC_005262.1 + 50303 0.66 0.278512
Target:  5'- gGCCGCGCGgAUugaggaGcCGGCCGcaGCGC-CCg -3'
miRNA:   3'- -CGGCGCGCgUG------C-GCCGGC--CGCGaGGg -5'
23982 5' -66.1 NC_005262.1 + 17415 0.66 0.278512
Target:  5'- cGCCGCGaCGCGCucgcgcuccuuGCGGUC--UGCUUCCu -3'
miRNA:   3'- -CGGCGC-GCGUG-----------CGCCGGccGCGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 26620 0.66 0.278512
Target:  5'- cCCGCGgGCAaaucgaagcgccCGCGuaGCUGGCGCaccgCCUg -3'
miRNA:   3'- cGGCGCgCGU------------GCGC--CGGCCGCGa---GGG- -5'
23982 5' -66.1 NC_005262.1 + 5123 0.66 0.278512
Target:  5'- uGCCuGCcaUGCGCGaCGGgCGGCGCUgaUCCu -3'
miRNA:   3'- -CGG-CGc-GCGUGC-GCCgGCCGCGA--GGG- -5'
23982 5' -66.1 NC_005262.1 + 23846 0.66 0.272124
Target:  5'- gGCCgGCaCGC-CGCccuuGCCGGUGCcgCCCg -3'
miRNA:   3'- -CGG-CGcGCGuGCGc---CGGCCGCGa-GGG- -5'
23982 5' -66.1 NC_005262.1 + 40722 0.66 0.272124
Target:  5'- gGCgGCGCugacgcccucgaGCACggGCGGCgGcGCGUUCCa -3'
miRNA:   3'- -CGgCGCG------------CGUG--CGCCGgC-CGCGAGGg -5'
23982 5' -66.1 NC_005262.1 + 33292 0.66 0.272124
Target:  5'- aUCGCGCGCACGC--CgGGCGCcgaagCCg -3'
miRNA:   3'- cGGCGCGCGUGCGccGgCCGCGa----GGg -5'
23982 5' -66.1 NC_005262.1 + 11579 0.66 0.272124
Target:  5'- aGCCGagcucgGCG-ACGCGGCCcauGUGCUCgCg -3'
miRNA:   3'- -CGGCg-----CGCgUGCGCCGGc--CGCGAGgG- -5'
23982 5' -66.1 NC_005262.1 + 45416 0.66 0.272124
Target:  5'- aGCCGCGCaaaACuCGGCCGG-GCUUa- -3'
miRNA:   3'- -CGGCGCGcg-UGcGCCGGCCgCGAGgg -5'
23982 5' -66.1 NC_005262.1 + 49910 0.66 0.27086
Target:  5'- uUCGCGCGCuccaucGCGCGGCCgaucgggccggacGGUGCaggggcgUCCg -3'
miRNA:   3'- cGGCGCGCG------UGCGCCGG-------------CCGCG-------AGGg -5'
23982 5' -66.1 NC_005262.1 + 49450 0.66 0.268347
Target:  5'- -aCGCGCGCGucgccgagucgucaGCGaGCgCGGCGCgcgCCUg -3'
miRNA:   3'- cgGCGCGCGUg-------------CGC-CG-GCCGCGa--GGG- -5'
23982 5' -66.1 NC_005262.1 + 12792 0.66 0.265853
Target:  5'- cGCCcgugagcauuggGCG-GCGCGCaGCCGGCGCg--- -3'
miRNA:   3'- -CGG------------CGCgCGUGCGcCGGCCGCGaggg -5'
23982 5' -66.1 NC_005262.1 + 44148 0.66 0.265853
Target:  5'- gGCCGgaCGCGCGCGCGaucgggcaggaGCgCGGCgGCgagCUCa -3'
miRNA:   3'- -CGGC--GCGCGUGCGC-----------CG-GCCG-CGa--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.