miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23983 3' -58.4 NC_005262.1 + 9787 0.66 0.586433
Target:  5'- -cCCUCGggU--UUGGCGCGaGCCUu- -3'
miRNA:   3'- aaGGAGCuuGuuGACCGCGC-CGGGcu -5'
23983 3' -58.4 NC_005262.1 + 9468 0.66 0.582161
Target:  5'- aUCCUgcacgguauggugcCGAuuccGCAccACUGGUgcgauuuGCGGCCCGAc -3'
miRNA:   3'- aAGGA--------------GCU----UGU--UGACCG-------CGCCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 33463 0.66 0.574702
Target:  5'- cUCCUCG-ACGugacGCUGcGCGCguucgaggauucgGGCCUGAc -3'
miRNA:   3'- aAGGAGCuUGU----UGAC-CGCG-------------CCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 41609 0.66 0.565145
Target:  5'- -gCgUCGGAUcaguGACggugugGGUGUGGCCCGGa -3'
miRNA:   3'- aaGgAGCUUG----UUGa-----CCGCGCCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 46526 0.66 0.554575
Target:  5'- gUCCggcgCGGGCGGCgcGGCG-GGCCCc- -3'
miRNA:   3'- aAGGa---GCUUGUUGa-CCGCgCCGGGcu -5'
23983 3' -58.4 NC_005262.1 + 6028 0.66 0.554575
Target:  5'- cUCuCUCGggUggugGugUGGUGCGGCaCGAu -3'
miRNA:   3'- aAG-GAGCuuG----UugACCGCGCCGgGCU- -5'
23983 3' -58.4 NC_005262.1 + 40203 0.66 0.533619
Target:  5'- -cCCUgGAAC-GCUGGUGC-GCUCGAc -3'
miRNA:   3'- aaGGAgCUUGuUGACCGCGcCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 16079 0.66 0.533619
Target:  5'- aUCCUgaugaCGAACcugAAC-GGCGCGGgCCUGAa -3'
miRNA:   3'- aAGGA-----GCUUG---UUGaCCGCGCC-GGGCU- -5'
23983 3' -58.4 NC_005262.1 + 50095 0.66 0.533619
Target:  5'- -aCUUCGGugGGCgccGGCGCGGCUUc- -3'
miRNA:   3'- aaGGAGCUugUUGa--CCGCGCCGGGcu -5'
23983 3' -58.4 NC_005262.1 + 17819 0.66 0.533619
Target:  5'- aUCCguUCGAccccgGCAACUGGCgagauggaaacGCGGCCguCGAc -3'
miRNA:   3'- aAGG--AGCU-----UGUUGACCG-----------CGCCGG--GCU- -5'
23983 3' -58.4 NC_005262.1 + 16980 0.66 0.533619
Target:  5'- ----gCGGGCggugcgGugUGGUGCGGCCCGGc -3'
miRNA:   3'- aaggaGCUUG------UugACCGCGCCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 41287 0.67 0.502741
Target:  5'- -gCCgcgcgUGGGCGACaucaagguaUGGCGCGGCgCGAu -3'
miRNA:   3'- aaGGa----GCUUGUUG---------ACCGCGCCGgGCU- -5'
23983 3' -58.4 NC_005262.1 + 17012 0.67 0.502741
Target:  5'- aUUCCUCucuccuuCAugUGGUGCGGUgCGGu -3'
miRNA:   3'- -AAGGAGcuu----GUugACCGCGCCGgGCU- -5'
23983 3' -58.4 NC_005262.1 + 7561 0.67 0.502741
Target:  5'- -aCCgCGGAUAgcccGCUGGCGUGGCaaGAc -3'
miRNA:   3'- aaGGaGCUUGU----UGACCGCGCCGggCU- -5'
23983 3' -58.4 NC_005262.1 + 41659 0.67 0.492621
Target:  5'- --gUUCGAguACGugUugugGGCGUGGCCCGGa -3'
miRNA:   3'- aagGAGCU--UGUugA----CCGCGCCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 28153 0.67 0.482595
Target:  5'- cUUCCcCGAgcgcgcggcGCAACUGcGCGCGGCggCCGu -3'
miRNA:   3'- -AAGGaGCU---------UGUUGAC-CGCGCCG--GGCu -5'
23983 3' -58.4 NC_005262.1 + 2835 0.67 0.482595
Target:  5'- -aCCUCGuuuGCGcGCUGGCGUG-CCCGc -3'
miRNA:   3'- aaGGAGCu--UGU-UGACCGCGCcGGGCu -5'
23983 3' -58.4 NC_005262.1 + 11131 0.67 0.482595
Target:  5'- -aCC-CGGACuuCUgGGCGUGGCuCCGGu -3'
miRNA:   3'- aaGGaGCUUGuuGA-CCGCGCCG-GGCU- -5'
23983 3' -58.4 NC_005262.1 + 51813 0.67 0.472668
Target:  5'- -gCCUCGGcgACGACUucaGCGCGGCCg-- -3'
miRNA:   3'- aaGGAGCU--UGUUGAc--CGCGCCGGgcu -5'
23983 3' -58.4 NC_005262.1 + 54285 0.67 0.472668
Target:  5'- -aCCUCG-ACGACgUGGCGCGccuCUCGAa -3'
miRNA:   3'- aaGGAGCuUGUUG-ACCGCGCc--GGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.