Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23983 | 3' | -58.4 | NC_005262.1 | + | 11755 | 1.06 | 0.000937 |
Target: 5'- cUUCCUCGAACAACUGGCGCGGCCCGAc -3' miRNA: 3'- -AAGGAGCUUGUUGACCGCGCCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 59309 | 0.76 | 0.133999 |
Target: 5'- cUCCUCGAGCuguuCaGGCGUguGGCCCGAc -3' miRNA: 3'- aAGGAGCUUGuu--GaCCGCG--CCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 28530 | 0.73 | 0.216223 |
Target: 5'- aUCggCGAcACGGCgagcacGGCGCGGCCCGAu -3' miRNA: 3'- aAGgaGCU-UGUUGa-----CCGCGCCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 4785 | 0.73 | 0.23355 |
Target: 5'- -aCUUgCGcAACGACUGGaugcCGCGGCCCGAu -3' miRNA: 3'- aaGGA-GC-UUGUUGACC----GCGCCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 34131 | 0.72 | 0.245118 |
Target: 5'- gUCgUCGAGCAACUgccgaucgacgcGGCgcacgauGCGGCCCGGc -3' miRNA: 3'- aAGgAGCUUGUUGA------------CCG-------CGCCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 54995 | 0.72 | 0.271698 |
Target: 5'- gUCaggugCGAGCcgucgAACUGGCGCGGCgCGAu -3' miRNA: 3'- aAGga---GCUUG-----UUGACCGCGCCGgGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 50128 | 0.71 | 0.307186 |
Target: 5'- -gUCUCGGgaGCAGCcGGCGcCGGCUCGGg -3' miRNA: 3'- aaGGAGCU--UGUUGaCCGC-GCCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 399 | 0.7 | 0.346111 |
Target: 5'- --aCUCGaAugGGCUGGCGUG-CCCGAc -3' miRNA: 3'- aagGAGC-UugUUGACCGCGCcGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 18732 | 0.7 | 0.346111 |
Target: 5'- cUCCUC-AGCuuC-GGCGCGGCUCGGc -3' miRNA: 3'- aAGGAGcUUGuuGaCCGCGCCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 21452 | 0.7 | 0.362642 |
Target: 5'- aUCUUCGuGCGcucGCUGcGCGCGGCCUu- -3' miRNA: 3'- aAGGAGCuUGU---UGAC-CGCGCCGGGcu -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 23445 | 0.69 | 0.379713 |
Target: 5'- -gCCgUCcGACGACUGGCGCaugcgcGGCCUGGa -3' miRNA: 3'- aaGG-AGcUUGUUGACCGCG------CCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 34891 | 0.69 | 0.415429 |
Target: 5'- aUCCUCGGACGGCUugaGGCGaaGCCa-- -3' miRNA: 3'- aAGGAGCUUGUUGA---CCGCgcCGGgcu -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 53471 | 0.69 | 0.415429 |
Target: 5'- gUCCUUGAACGcggucugcgGCaGGCGCauGGCgCCGAu -3' miRNA: 3'- aAGGAGCUUGU---------UGaCCGCG--CCG-GGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 10653 | 0.69 | 0.415429 |
Target: 5'- cUCCgCGGuacgcuGCGGCUGcGCGCGGCCgGu -3' miRNA: 3'- aAGGaGCU------UGUUGAC-CGCGCCGGgCu -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 43089 | 0.68 | 0.434043 |
Target: 5'- ----cCGAAgAACUGGCccgacacgaaGCGGCCCGGc -3' miRNA: 3'- aaggaGCUUgUUGACCG----------CGCCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 40735 | 0.68 | 0.44353 |
Target: 5'- -cCCUCGAGC-ACgGGCGgCGGCgCGu -3' miRNA: 3'- aaGGAGCUUGuUGaCCGC-GCCGgGCu -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 56809 | 0.68 | 0.462846 |
Target: 5'- -aCgUCGAGCGGCUGGaGCG-CCUGAg -3' miRNA: 3'- aaGgAGCUUGUUGACCgCGCcGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 11502 | 0.67 | 0.472668 |
Target: 5'- -aCCUUcGGCGGCccGGCGCGGCgCGGc -3' miRNA: 3'- aaGGAGcUUGUUGa-CCGCGCCGgGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 54285 | 0.67 | 0.472668 |
Target: 5'- -aCCUCG-ACGACgUGGCGCGccuCUCGAa -3' miRNA: 3'- aaGGAGCuUGUUG-ACCGCGCc--GGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 51813 | 0.67 | 0.472668 |
Target: 5'- -gCCUCGGcgACGACUucaGCGCGGCCg-- -3' miRNA: 3'- aaGGAGCU--UGUUGAc--CGCGCCGGgcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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