miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23983 3' -58.4 NC_005262.1 + 399 0.7 0.346111
Target:  5'- --aCUCGaAugGGCUGGCGUG-CCCGAc -3'
miRNA:   3'- aagGAGC-UugUUGACCGCGCcGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 2835 0.67 0.482595
Target:  5'- -aCCUCGuuuGCGcGCUGGCGUG-CCCGc -3'
miRNA:   3'- aaGGAGCu--UGU-UGACCGCGCcGGGCu -5'
23983 3' -58.4 NC_005262.1 + 4785 0.73 0.23355
Target:  5'- -aCUUgCGcAACGACUGGaugcCGCGGCCCGAu -3'
miRNA:   3'- aaGGA-GC-UUGUUGACC----GCGCCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 6028 0.66 0.554575
Target:  5'- cUCuCUCGggUggugGugUGGUGCGGCaCGAu -3'
miRNA:   3'- aAG-GAGCuuG----UugACCGCGCCGgGCU- -5'
23983 3' -58.4 NC_005262.1 + 7561 0.67 0.502741
Target:  5'- -aCCgCGGAUAgcccGCUGGCGUGGCaaGAc -3'
miRNA:   3'- aaGGaGCUUGU----UGACCGCGCCGggCU- -5'
23983 3' -58.4 NC_005262.1 + 9468 0.66 0.582161
Target:  5'- aUCCUgcacgguauggugcCGAuuccGCAccACUGGUgcgauuuGCGGCCCGAc -3'
miRNA:   3'- aAGGA--------------GCU----UGU--UGACCG-------CGCCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 9787 0.66 0.586433
Target:  5'- -cCCUCGggU--UUGGCGCGaGCCUu- -3'
miRNA:   3'- aaGGAGCuuGuuGACCGCGC-CGGGcu -5'
23983 3' -58.4 NC_005262.1 + 10653 0.69 0.415429
Target:  5'- cUCCgCGGuacgcuGCGGCUGcGCGCGGCCgGu -3'
miRNA:   3'- aAGGaGCU------UGUUGAC-CGCGCCGGgCu -5'
23983 3' -58.4 NC_005262.1 + 11131 0.67 0.482595
Target:  5'- -aCC-CGGACuuCUgGGCGUGGCuCCGGu -3'
miRNA:   3'- aaGGaGCUUGuuGA-CCGCGCCG-GGCU- -5'
23983 3' -58.4 NC_005262.1 + 11502 0.67 0.472668
Target:  5'- -aCCUUcGGCGGCccGGCGCGGCgCGGc -3'
miRNA:   3'- aaGGAGcUUGUUGa-CCGCGCCGgGCU- -5'
23983 3' -58.4 NC_005262.1 + 11755 1.06 0.000937
Target:  5'- cUUCCUCGAACAACUGGCGCGGCCCGAc -3'
miRNA:   3'- -AAGGAGCUUGUUGACCGCGCCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 16079 0.66 0.533619
Target:  5'- aUCCUgaugaCGAACcugAAC-GGCGCGGgCCUGAa -3'
miRNA:   3'- aAGGA-----GCUUG---UUGaCCGCGCC-GGGCU- -5'
23983 3' -58.4 NC_005262.1 + 16980 0.66 0.533619
Target:  5'- ----gCGGGCggugcgGugUGGUGCGGCCCGGc -3'
miRNA:   3'- aaggaGCUUG------UugACCGCGCCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 17012 0.67 0.502741
Target:  5'- aUUCCUCucuccuuCAugUGGUGCGGUgCGGu -3'
miRNA:   3'- -AAGGAGcuu----GUugACCGCGCCGgGCU- -5'
23983 3' -58.4 NC_005262.1 + 17819 0.66 0.533619
Target:  5'- aUCCguUCGAccccgGCAACUGGCgagauggaaacGCGGCCguCGAc -3'
miRNA:   3'- aAGG--AGCU-----UGUUGACCG-----------CGCCGG--GCU- -5'
23983 3' -58.4 NC_005262.1 + 18732 0.7 0.346111
Target:  5'- cUCCUC-AGCuuC-GGCGCGGCUCGGc -3'
miRNA:   3'- aAGGAGcUUGuuGaCCGCGCCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 21452 0.7 0.362642
Target:  5'- aUCUUCGuGCGcucGCUGcGCGCGGCCUu- -3'
miRNA:   3'- aAGGAGCuUGU---UGAC-CGCGCCGGGcu -5'
23983 3' -58.4 NC_005262.1 + 23445 0.69 0.379713
Target:  5'- -gCCgUCcGACGACUGGCGCaugcgcGGCCUGGa -3'
miRNA:   3'- aaGG-AGcUUGUUGACCGCG------CCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 28153 0.67 0.482595
Target:  5'- cUUCCcCGAgcgcgcggcGCAACUGcGCGCGGCggCCGu -3'
miRNA:   3'- -AAGGaGCU---------UGUUGAC-CGCGCCG--GGCu -5'
23983 3' -58.4 NC_005262.1 + 28530 0.73 0.216223
Target:  5'- aUCggCGAcACGGCgagcacGGCGCGGCCCGAu -3'
miRNA:   3'- aAGgaGCU-UGUUGa-----CCGCGCCGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.