miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23983 3' -58.4 NC_005262.1 + 33463 0.66 0.574702
Target:  5'- cUCCUCG-ACGugacGCUGcGCGCguucgaggauucgGGCCUGAc -3'
miRNA:   3'- aAGGAGCuUGU----UGAC-CGCG-------------CCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 34131 0.72 0.245118
Target:  5'- gUCgUCGAGCAACUgccgaucgacgcGGCgcacgauGCGGCCCGGc -3'
miRNA:   3'- aAGgAGCUUGUUGA------------CCG-------CGCCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 34891 0.69 0.415429
Target:  5'- aUCCUCGGACGGCUugaGGCGaaGCCa-- -3'
miRNA:   3'- aAGGAGCUUGUUGA---CCGCgcCGGgcu -5'
23983 3' -58.4 NC_005262.1 + 40203 0.66 0.533619
Target:  5'- -cCCUgGAAC-GCUGGUGC-GCUCGAc -3'
miRNA:   3'- aaGGAgCUUGuUGACCGCGcCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 40735 0.68 0.44353
Target:  5'- -cCCUCGAGC-ACgGGCGgCGGCgCGu -3'
miRNA:   3'- aaGGAGCUUGuUGaCCGC-GCCGgGCu -5'
23983 3' -58.4 NC_005262.1 + 41287 0.67 0.502741
Target:  5'- -gCCgcgcgUGGGCGACaucaagguaUGGCGCGGCgCGAu -3'
miRNA:   3'- aaGGa----GCUUGUUG---------ACCGCGCCGgGCU- -5'
23983 3' -58.4 NC_005262.1 + 41609 0.66 0.565145
Target:  5'- -gCgUCGGAUcaguGACggugugGGUGUGGCCCGGa -3'
miRNA:   3'- aaGgAGCUUG----UUGa-----CCGCGCCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 41659 0.67 0.492621
Target:  5'- --gUUCGAguACGugUugugGGCGUGGCCCGGa -3'
miRNA:   3'- aagGAGCU--UGUugA----CCGCGCCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 43089 0.68 0.434043
Target:  5'- ----cCGAAgAACUGGCccgacacgaaGCGGCCCGGc -3'
miRNA:   3'- aaggaGCUUgUUGACCG----------CGCCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 46526 0.66 0.554575
Target:  5'- gUCCggcgCGGGCGGCgcGGCG-GGCCCc- -3'
miRNA:   3'- aAGGa---GCUUGUUGa-CCGCgCCGGGcu -5'
23983 3' -58.4 NC_005262.1 + 50095 0.66 0.533619
Target:  5'- -aCUUCGGugGGCgccGGCGCGGCUUc- -3'
miRNA:   3'- aaGGAGCUugUUGa--CCGCGCCGGGcu -5'
23983 3' -58.4 NC_005262.1 + 50128 0.71 0.307186
Target:  5'- -gUCUCGGgaGCAGCcGGCGcCGGCUCGGg -3'
miRNA:   3'- aaGGAGCU--UGUUGaCCGC-GCCGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 51813 0.67 0.472668
Target:  5'- -gCCUCGGcgACGACUucaGCGCGGCCg-- -3'
miRNA:   3'- aaGGAGCU--UGUUGAc--CGCGCCGGgcu -5'
23983 3' -58.4 NC_005262.1 + 53471 0.69 0.415429
Target:  5'- gUCCUUGAACGcggucugcgGCaGGCGCauGGCgCCGAu -3'
miRNA:   3'- aAGGAGCUUGU---------UGaCCGCG--CCG-GGCU- -5'
23983 3' -58.4 NC_005262.1 + 54285 0.67 0.472668
Target:  5'- -aCCUCG-ACGACgUGGCGCGccuCUCGAa -3'
miRNA:   3'- aaGGAGCuUGUUG-ACCGCGCc--GGGCU- -5'
23983 3' -58.4 NC_005262.1 + 54995 0.72 0.271698
Target:  5'- gUCaggugCGAGCcgucgAACUGGCGCGGCgCGAu -3'
miRNA:   3'- aAGga---GCUUG-----UUGACCGCGCCGgGCU- -5'
23983 3' -58.4 NC_005262.1 + 56809 0.68 0.462846
Target:  5'- -aCgUCGAGCGGCUGGaGCG-CCUGAg -3'
miRNA:   3'- aaGgAGCUUGUUGACCgCGCcGGGCU- -5'
23983 3' -58.4 NC_005262.1 + 59309 0.76 0.133999
Target:  5'- cUCCUCGAGCuguuCaGGCGUguGGCCCGAc -3'
miRNA:   3'- aAGGAGCUUGuu--GaCCGCG--CCGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.