Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23983 | 3' | -58.4 | NC_005262.1 | + | 399 | 0.7 | 0.346111 |
Target: 5'- --aCUCGaAugGGCUGGCGUG-CCCGAc -3' miRNA: 3'- aagGAGC-UugUUGACCGCGCcGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 50128 | 0.71 | 0.307186 |
Target: 5'- -gUCUCGGgaGCAGCcGGCGcCGGCUCGGg -3' miRNA: 3'- aaGGAGCU--UGUUGaCCGC-GCCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 54995 | 0.72 | 0.271698 |
Target: 5'- gUCaggugCGAGCcgucgAACUGGCGCGGCgCGAu -3' miRNA: 3'- aAGga---GCUUG-----UUGACCGCGCCGgGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 34131 | 0.72 | 0.245118 |
Target: 5'- gUCgUCGAGCAACUgccgaucgacgcGGCgcacgauGCGGCCCGGc -3' miRNA: 3'- aAGgAGCUUGUUGA------------CCG-------CGCCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 4785 | 0.73 | 0.23355 |
Target: 5'- -aCUUgCGcAACGACUGGaugcCGCGGCCCGAu -3' miRNA: 3'- aaGGA-GC-UUGUUGACC----GCGCCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 28530 | 0.73 | 0.216223 |
Target: 5'- aUCggCGAcACGGCgagcacGGCGCGGCCCGAu -3' miRNA: 3'- aAGgaGCU-UGUUGa-----CCGCGCCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 34891 | 0.69 | 0.415429 |
Target: 5'- aUCCUCGGACGGCUugaGGCGaaGCCa-- -3' miRNA: 3'- aAGGAGCUUGUUGA---CCGCgcCGGgcu -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 43089 | 0.68 | 0.434043 |
Target: 5'- ----cCGAAgAACUGGCccgacacgaaGCGGCCCGGc -3' miRNA: 3'- aaggaGCUUgUUGACCG----------CGCCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 9787 | 0.66 | 0.586433 |
Target: 5'- -cCCUCGggU--UUGGCGCGaGCCUu- -3' miRNA: 3'- aaGGAGCuuGuuGACCGCGC-CGGGcu -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 41609 | 0.66 | 0.565145 |
Target: 5'- -gCgUCGGAUcaguGACggugugGGUGUGGCCCGGa -3' miRNA: 3'- aaGgAGCUUG----UUGa-----CCGCGCCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 46526 | 0.66 | 0.554575 |
Target: 5'- gUCCggcgCGGGCGGCgcGGCG-GGCCCc- -3' miRNA: 3'- aAGGa---GCUUGUUGa-CCGCgCCGGGcu -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 16980 | 0.66 | 0.533619 |
Target: 5'- ----gCGGGCggugcgGugUGGUGCGGCCCGGc -3' miRNA: 3'- aaggaGCUUG------UugACCGCGCCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 50095 | 0.66 | 0.533619 |
Target: 5'- -aCUUCGGugGGCgccGGCGCGGCUUc- -3' miRNA: 3'- aaGGAGCUugUUGa--CCGCGCCGGGcu -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 17012 | 0.67 | 0.502741 |
Target: 5'- aUUCCUCucuccuuCAugUGGUGCGGUgCGGu -3' miRNA: 3'- -AAGGAGcuu----GUugACCGCGCCGgGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 7561 | 0.67 | 0.502741 |
Target: 5'- -aCCgCGGAUAgcccGCUGGCGUGGCaaGAc -3' miRNA: 3'- aaGGaGCUUGU----UGACCGCGCCGggCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 41659 | 0.67 | 0.492621 |
Target: 5'- --gUUCGAguACGugUugugGGCGUGGCCCGGa -3' miRNA: 3'- aagGAGCU--UGUugA----CCGCGCCGGGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 11502 | 0.67 | 0.472668 |
Target: 5'- -aCCUUcGGCGGCccGGCGCGGCgCGGc -3' miRNA: 3'- aaGGAGcUUGUUGa-CCGCGCCGgGCU- -5' |
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23983 | 3' | -58.4 | NC_005262.1 | + | 59309 | 0.76 | 0.133999 |
Target: 5'- cUCCUCGAGCuguuCaGGCGUguGGCCCGAc -3' miRNA: 3'- aAGGAGCUUGuu--GaCCGCG--CCGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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