Results 1 - 4 of 4 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23983 | 5' | -55.2 | NC_005262.1 | + | 61490 | 0.66 | 0.721687 |
Target: 5'- gCCUUcGCCUcgcgCGCGAGGUcguaguagcGGCUGCGc -3' miRNA: 3'- -GGAGaUGGGa---GUGUUCCA---------CCGACGUa -5' |
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23983 | 5' | -55.2 | NC_005262.1 | + | 37068 | 0.7 | 0.493656 |
Target: 5'- uUUCUGCCCUCACGAcgaauGGUGGauacaaggGCGUc -3' miRNA: 3'- gGAGAUGGGAGUGUU-----CCACCga------CGUA- -5' |
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23983 | 5' | -55.2 | NC_005262.1 | + | 2317 | 0.7 | 0.473156 |
Target: 5'- aCUUUGCCCUUACAGGGagcGGCUucgacGCGa -3' miRNA: 3'- gGAGAUGGGAGUGUUCCa--CCGA-----CGUa -5' |
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23983 | 5' | -55.2 | NC_005262.1 | + | 11793 | 1.08 | 0.001237 |
Target: 5'- uCCUCUACCCUCACAAGGUGGCUGCAUg -3' miRNA: 3'- -GGAGAUGGGAGUGUUCCACCGACGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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