miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23984 3' -56.5 NC_005262.1 + 5976 0.66 0.716239
Target:  5'- -gGUCGGCuuuugcCGGCCGGCUGCuGCu-- -3'
miRNA:   3'- agCAGUCGu-----GCUGGUCGAUGcCGcac -5'
23984 3' -56.5 NC_005262.1 + 16990 0.66 0.716239
Target:  5'- gCGgugCGGUGCGGgCGG-UGCGGUGUGg -3'
miRNA:   3'- aGCa--GUCGUGCUgGUCgAUGCCGCAC- -5'
23984 3' -56.5 NC_005262.1 + 4825 0.66 0.716239
Target:  5'- uUCGcCGGCGCGACgCAGUgccuuucCGGUGg- -3'
miRNA:   3'- -AGCaGUCGUGCUG-GUCGau-----GCCGCac -5'
23984 3' -56.5 NC_005262.1 + 51406 0.66 0.716239
Target:  5'- cCGUguGCACcGCguGCUcgGCGGCGc- -3'
miRNA:   3'- aGCAguCGUGcUGguCGA--UGCCGCac -5'
23984 3' -56.5 NC_005262.1 + 27160 0.66 0.716239
Target:  5'- gUGcCGGCAC-ACCGGCcgcAUGGUGUGg -3'
miRNA:   3'- aGCaGUCGUGcUGGUCGa--UGCCGCAC- -5'
23984 3' -56.5 NC_005262.1 + 2157 0.66 0.716239
Target:  5'- -gGUCAGCGC-AUCAGC-GCGGCu-- -3'
miRNA:   3'- agCAGUCGUGcUGGUCGaUGCCGcac -5'
23984 3' -56.5 NC_005262.1 + 40369 0.66 0.715189
Target:  5'- aUCGUCGGCgacgucgACGGCCuGuCUGCcGCGUu -3'
miRNA:   3'- -AGCAGUCG-------UGCUGGuC-GAUGcCGCAc -5'
23984 3' -56.5 NC_005262.1 + 32819 0.66 0.705704
Target:  5'- aCGUCGGCcucAUGuCCGGCgacguCGGCGa- -3'
miRNA:   3'- aGCAGUCG---UGCuGGUCGau---GCCGCac -5'
23984 3' -56.5 NC_005262.1 + 58976 0.66 0.705704
Target:  5'- aUCGcgCAGCGCGgcagcaGCCaacgcgcggAGCUGCgccGGCGUGa -3'
miRNA:   3'- -AGCa-GUCGUGC------UGG---------UCGAUG---CCGCAC- -5'
23984 3' -56.5 NC_005262.1 + 38621 0.66 0.705704
Target:  5'- aUCGUCAcCGCGACCguguAGCUcuugcCGGcCGUGc -3'
miRNA:   3'- -AGCAGUcGUGCUGG----UCGAu----GCC-GCAC- -5'
23984 3' -56.5 NC_005262.1 + 16430 0.66 0.705704
Target:  5'- cCGaUCAGCGCGccgaGCCAGaggaucGCGGCGaUGa -3'
miRNA:   3'- aGC-AGUCGUGC----UGGUCga----UGCCGC-AC- -5'
23984 3' -56.5 NC_005262.1 + 44605 0.66 0.704647
Target:  5'- aCGaUCAGCGCGGCgaucaGGCUggcccagAUGGCGUu -3'
miRNA:   3'- aGC-AGUCGUGCUGg----UCGA-------UGCCGCAc -5'
23984 3' -56.5 NC_005262.1 + 4551 0.66 0.6951
Target:  5'- aUCGUgCGcGCGCGgcgcaucucgcGCCAGCgGCGGCGcUGc -3'
miRNA:   3'- -AGCA-GU-CGUGC-----------UGGUCGaUGCCGC-AC- -5'
23984 3' -56.5 NC_005262.1 + 56840 0.66 0.6951
Target:  5'- cUCGUC-GCcCGacGCCAGC-GCGGCGg- -3'
miRNA:   3'- -AGCAGuCGuGC--UGGUCGaUGCCGCac -5'
23984 3' -56.5 NC_005262.1 + 38158 0.66 0.6951
Target:  5'- aCGUCAGCAaGAUCGcGCcaGCGGcCGUGc -3'
miRNA:   3'- aGCAGUCGUgCUGGU-CGa-UGCC-GCAC- -5'
23984 3' -56.5 NC_005262.1 + 15158 0.66 0.683368
Target:  5'- -aGUCGGCGCGgauguuggacggcACgCAGCgcuacGCGGCGUu -3'
miRNA:   3'- agCAGUCGUGC-------------UG-GUCGa----UGCCGCAc -5'
23984 3' -56.5 NC_005262.1 + 35841 0.66 0.683368
Target:  5'- gCGUCGGCgccGCGACCGcccagauguuuguGC-GCGGCGa- -3'
miRNA:   3'- aGCAGUCG---UGCUGGU-------------CGaUGCCGCac -5'
23984 3' -56.5 NC_005262.1 + 37694 0.66 0.673726
Target:  5'- cUCGUC-GUugGAUacGCUaACGGCGUGc -3'
miRNA:   3'- -AGCAGuCGugCUGguCGA-UGCCGCAC- -5'
23984 3' -56.5 NC_005262.1 + 49684 0.66 0.673726
Target:  5'- gUCGgCGGCGCGcgcaaccugaACC-GCgACGGCGUGc -3'
miRNA:   3'- -AGCaGUCGUGC----------UGGuCGaUGCCGCAC- -5'
23984 3' -56.5 NC_005262.1 + 10478 0.66 0.673726
Target:  5'- aCGaCAGCgGCGACCAGCaGCaGCGc- -3'
miRNA:   3'- aGCaGUCG-UGCUGGUCGaUGcCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.